Sequence 1: | NP_001285801.1 | Gene: | nmd / 44021 | FlyBaseID: | FBgn0005322 | Length: | 369 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_446316.1 | Gene: | Vcp / 116643 | RGDID: | 621595 | Length: | 806 | Species: | Rattus norvegicus |
Alignment Length: | 322 | Identity: | 114/322 - (35%) |
---|---|---|---|
Similarity: | 167/322 - (51%) | Gaps: | 57/322 - (17%) |
- Green bases have known domain annotations that are detailed below.
Fly 29 ITYYSVKWMMNQMDPTSKNKKKAKVLAEEQLKRLAEQEGFKLRGQEFSDYELMIASHLVVPADIT 93
Fly 94 VSWADIAGLDSVIQELRESVVLPIQHKDLFKHSKLWQAP-KGVLLHGPPGCGKTLIAKATAKEAG 157
Fly 158 MRFINLDVAILTDKWYGESQKLTSAVFSLASRIEPCIIFIDEIDSFLRSR--NMNDHEATA-MMK 219
Fly 220 TQFMMLWDGLSTNANSTVIVMGATNRPQDLDKAIVR--RMPAQFHIGLPSETQRKDILKLILQSE 282
Fly 283 EVSQDVDLNRLSKLTNGFSGSDLREMCRNASVYRMRQLITSR---------DPSATALDRNN 335 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
nmd | NP_001285801.1 | AAA | 132..266 | CDD:214640 | 58/139 (42%) |
AAA | 135..265 | CDD:278434 | 55/134 (41%) | ||
Vcp | NP_446316.1 | CDC48 | 25..764 | CDD:273521 | 114/322 (35%) |
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 708..727 | 3/19 (16%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 768..806 | ||||
Interaction with UBXN6. /evidence=ECO:0000250 | 797..806 | ||||
PIM motif. /evidence=ECO:0000250|UniProtKB:P55072 | 802..806 | ||||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG0464 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.810 |