DRSC/TRiP Functional Genomics Resources

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Protein Alignment nmd and Vcp

DIOPT Version :10

Sequence 1:NP_609373.1 Gene:nmd / 44021 FlyBaseID:FBgn0005322 Length:369 Species:Drosophila melanogaster
Sequence 2:NP_446316.1 Gene:Vcp / 116643 RGDID:621595 Length:806 Species:Rattus norvegicus


Alignment Length:322 Identity:114/322 - (35%)
Similarity:167/322 - (51%) Gaps:57/322 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 ITYYSVKWMMNQMDPTSKNKKKAKVLAEEQLKRLAEQEGFKLRGQEFSDYELMIASHLVVPADIT 93
            :|....:|.::|.:|::        |.|..::                           ||   .
  Rat   447 VTMDDFRWALSQSNPSA--------LRETVVE---------------------------VP---Q 473

  Fly    94 VSWADIAGLDSVIQELRESVVLPIQHKDLFKHSKLWQAP-KGVLLHGPPGCGKTLIAKATAKEAG 157
            |:|.||.||:.|.:||:|.|..|::|.|  |..|....| ||||.:|||||||||:|||.|.|..
  Rat   474 VTWEDIGGLEDVKRELQELVQYPVEHPD--KFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536

  Fly   158 MRFINLDVAILTDKWYGESQKLTSAVFSLASRIEPCIIFIDEIDSFLRSR--NMNDHEATA-MMK 219
            ..||::....|...|:|||:.....:|..|.:..||::|.||:||..::|  |:.|....| .:.
  Rat   537 ANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVI 601

  Fly   220 TQFMMLWDGLSTNANSTVIVMGATNRPQDLDKAIVR--RMPAQFHIGLPSETQRKDILKLILQSE 282
            .|.:...||:||..|  |.::||||||..:|.||:|  |:....:|.||.|..|..|||..|:..
  Rat   602 NQILTEMDGMSTKKN--VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS 664

  Fly   283 EVSQDVDLNRLSKLTNGFSGSDLREMCRNASVYRMRQLITSR---------DPSATALDRNN 335
            .|::||||..|:|:||||||:||.|:|:.|....:|:.|.|.         :|||..::.::
  Rat   665 PVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDD 726

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nmdNP_609373.1 RecA-like_ATAD1 98..263 CDD:410928 71/170 (42%)
AAA_lid_3 287..323 CDD:465537 19/35 (54%)
VcpNP_446316.1 CDC48 25..764 CDD:273521 114/322 (35%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 708..727 3/19 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 768..806
Interaction with UBXN6. /evidence=ECO:0000250 797..806
PIM motif. /evidence=ECO:0000250|UniProtKB:P55072 802..806
Blue background indicates that the domain is not in the aligned region.

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