Protein Alignment nmd and katnal1

DIOPT Version :10

• Sequence 1: NP_609373.1
• Gene: nmd / 44021
• FlyBaseID: FBgn0005322
• Length: 369
• Species: Drosophila melanogaster
• Sequence 2: XP_004912098.2
• Gene: katnal1 / 100489961
• XenbaseID: XB-GENE-984420
• Length: 540
• Species: Xenopus tropicalis
• Alignment Length: 333
• Identity: 117/333 - (35%)
• Similarity: 185/333 - (55%)
• Gaps: 28/333 - (8%)

  Fly    42 DPTSKNKKKAKVLAEEQLKRLAEQEGFKLRGQEFSDYELMIA-SHLVVPADITVSWADIAGLDSV 105
            |...||::.|.  |:.:||:. :..|:        |.:|:.| ...::..:..|.|.|||.|:..
 Frog   213 DKGRKNQQDAG--ADGELKKF-DGAGY--------DKDLVEALERDIISRNPNVHWEDIADLEDA 266

  Fly   106 IQELRESVVLPIQHKDLFKH-SKLWQAPKGVLLHGPPGCGKTLIAKATAKEAGMRFINLDVAILT 169
            .:.|||:||||:...|.||. .:.|   ||||:.||||.|||::|||.|.|.|..|.|:..:.||
 Frog   267 KKLLREAVVLPMWMPDFFKGIRRPW---KGVLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLT 328

  Fly   170 DKWYGESQKLTSAVFSLASRIEPCIIFIDEIDSFLRSRNMND-HEATAMMKTQFMMLWDGL---- 229
            .|:.|||:||...:|.:|....|..||||||||....|..:| |||:..:|::.::..||:
 Frog   329 SKYRGESEKLVRLLFEMARFYAPTTIFIDEIDSICSRRGTSDEHEASRRVKSELLVQMDGVGGAL 393

  Fly   230 -STNANSTVIVMGATNRPQDLDKAIVRRMPAQFHIGLPSETQRKDILKLILQSEEVSQDVDLNRL 293
             :.:.:..|:|:.|||.|.|:|:|:.||:..:.:|.||:...|.::||:.|:..|:...|||..:
 Frog   394 ENDDPSKMVMVLAATNFPWDIDEALRRRLEKRIYIPLPTANGRAELLKINLREVELEPSVDLEVI 458

  Fly   294 SKLTNGFSGSDLREMCRNASVYRMRQLITSRDPS---ATALDRNNVRITMDDLLGSHLKIKESKM 355
            ::...|:||:|:..:||:||:..||:.|....|.   |.:.|...:.:|:.|.   .|.:|:...
 Frog   459 AQKIEGYSGADITNVCRDASMMAMRRRIQGLTPEQIRALSKDELQMPVTVMDF---ELALKKVSK 520

  Fly   356 HTSSLFLE 363
            ..|:..||
 Frog   521 SVSAADLE 528

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
nmd	NP_609373.1	RecA-like_ATAD1	98..263	CDD:410928	72/171 (42%)
		AAA_lid_3	287..323	CDD:465537	14/35 (40%)
katnal1	XP_004912098.2	Kp60-NTD	57..125	CDD:439297
		RecA-like_KTNA1	259..428	CDD:410930	72/171 (42%)
		AAA_lid_3	452..496	CDD:465537	15/43 (35%)
		Vps4_C	<500..538	CDD:462762	8/32 (25%)