Protein Alignment nmd and fign

DIOPT Version :10

• Sequence 1: NP_609373.1
• Gene: nmd / 44021
• FlyBaseID: FBgn0005322
• Length: 369
• Species: Drosophila melanogaster
• Sequence 2: XP_004917757.1
• Gene: fign / 100488151
• XenbaseID: XB-GENE-1011106
• Length: 783
• Species: Xenopus tropicalis
• Alignment Length: 313
• Identity: 92/313 - (29%)
• Similarity: 156/313 - (49%)
• Gaps: 27/313 - (8%)

  Fly    44 TSKNKKKAKVLAEEQLKRLAEQEGFKLRGQEFSDYELM-IASHLVVPADITVSWADIAGLDSVIQ 107
            ||.|..     .::|||.              :|..|: :.::.::.....|.|.:|||||.|..
 Frog   475 TSSNHS-----VDDQLKN--------------TDSHLIDLVTNEIINQGHPVDWDEIAGLDLVKA 520

  Fly   108 ELRESVVLPIQHKDLFKHSKLWQAPKGVLLHGPPGCGKTLIAKATAKEAGMRFINLDVAILTDKW 172
            .::|.|:.|:...|.|  |.|...|:.:||.||.|.||||:.:..|.:.|..|..:..:.|..||
 Frog   521 FIKEEVLWPVIRSDAF--SGLTALPRSILLFGPRGTGKTLLGRCIASQLGATFFKISASNLVTKW 583

  Fly   173 YGESQKLTSAVFSLASRIEPCIIFIDEIDSFLRSRNMNDHEATAMMKTQFMMLWDGLSTNANSTV 237
            ..|.:|:..|.|.:|...:|.:||:.:||..|.|:...:|...:.|:|:|:|..|.:.::|...:
 Frog   584 ITEGEKIVHASFLVARCRQPSVIFVSDIDMLLSSQVNEEHSPISRMRTEFLMQLDTVLSSAEDQI 648

  Fly   238 IVMGATNRPQDLDKAIVRRMPAQFHIGLPSETQRKD-ILKLILQSEEVSQDVDLNRLSKLTNGFS 301
            :|:.||::|:.:|:::.|....:..|.||..|.|.. |::|:.|......|.::..|.:.|.|||
 Frog   649 VVICATSKPEQIDESLRRYFMKRLLIPLPDSTARHQIIIQLLSQHNYCLNDKEVALLVQRTEGFS 713

  Fly   302 GSDLREMCRNASVYRMRQLITSRDPSATALDRNNVR-ITMDDLLGSHLKIKES 353
            |.|:..:|:.|.|..:..:..|   ..:|:..|.:| :|..|......||:.|
 Frog   714 GLDVARLCQEAVVGPLHAIPPS---DLSAIMPNQLRPVTYQDFENVFCKIQPS 763

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
nmd	NP_609373.1	RecA-like_ATAD1	98..263	CDD:410928	54/164 (33%)
		AAA_lid_3	287..323	CDD:465537	11/35 (31%)
fign	XP_004917757.1	RecA-like_fidgetin	511..674	CDD:410931	54/164 (33%)
		AAA_lid_3	705..>732	CDD:465537	10/26 (38%)
		Vps4_C	<732..780	CDD:462762	9/35 (26%)