Protein Alignment nmd and katnal2

DIOPT Version :10

• Sequence 1: NP_609373.1
• Gene: nmd / 44021
• FlyBaseID: FBgn0005322
• Length: 369
• Species: Drosophila melanogaster
• Sequence 2: NP_001090643.1
• Gene: katnal2 / 100036615
• XenbaseID: XB-GENE-5827282
• Length: 542
• Species: Xenopus tropicalis
• Alignment Length: 291
• Identity: 97/291 - (33%)
• Similarity: 163/291 - (56%)
• Gaps: 31/291 - (10%)

  Fly    87 VVPADI-----TVSWADIAGLDSVIQELRESVVLPIQHKDLFKHSKLWQAPKGVLLHGPPGCGKT 146
            |:..||     .|.|.||.|||:..:.::|:||.||::..||  :.:....||:||:||||.|||
 Frog   243 VISRDIYLQNPNVRWDDIIGLDAAKRLVKEAVVYPIRYPQLF--TGILSPWKGLLLYGPPGTGKT 305

  Fly   147 LIAKATAKEAGMRFINLDVAILTDKWYGESQKLTSAVFSLASRIEPCIIFIDEIDSFLRSRNM-- 209
            |:|||.|.|....|.|:..:.:..||.|:|:||...:|.||....|..||:||::|.:..|..
 Frog   306 LLAKAVATECNTTFFNISASTIVSKWRGDSEKLVRVLFELARYHAPSTIFLDELESVMSQRGTGP 370

  Fly   210 -NDHEATAMMKTQFMMLWDGLSTNANSTVIVMGATNRPQDLDKAIVRRMPAQFHIGLPSETQRKD 273
             .:||.:..|||:.::..|||: .::..|.|:.|:|.|.:||.|::||:..:..:.|||:..|:.
 Frog   371 GGEHEGSRRMKTELLVQMDGLA-RSDDLVFVLAASNLPWELDYAMLRRLEKRILVDLPSKEARQA 434

  Fly   274 ILKLIL------QSEEVSQDVDLNRLSKLTNGFSGSDLREMCRNASVYRMRQLITSRDPSATALD 332
            :::..|      ...|:..|:|.:.|...|:|:||||:|.:|:.|::..:|::..:.: :..:..
 Frog   435 MIQHWLPPVSNSSGVELRTDLDYSTLGAETDGYSGSDIRLVCKEAAMRPVRKIFDALE-NHHSEH 498

  Fly   333 RNNVRITMDDLLGSHLKIKESKMHTSSLFLE 363
            :|...|::|.:             |:|.|||
 Frog   499 KNLPVISLDTV-------------TTSDFLE 516

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
nmd	NP_609373.1	RecA-like_ATAD1	98..263	CDD:410928	65/167 (39%)
		AAA_lid_3	287..323	CDD:465537	13/35 (37%)
katnal2	NP_001090643.1	LisH	25..57	CDD:128913
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	94..126
		Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite	142..168
		RPT1	197..526	CDD:440835	97/291 (33%)