DRSC/TRiP Functional Genomics Resources

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Protein Alignment sol and Capn6

DIOPT Version :9

Sequence 1:NP_476738.3 Gene:sol / 44014 FlyBaseID:FBgn0003464 Length:1594 Species:Drosophila melanogaster
Sequence 2:NP_113996.2 Gene:Capn6 / 83685 RGDID:70960 Length:641 Species:Rattus norvegicus


Alignment Length:622 Identity:154/622 - (24%)
Similarity:247/622 - (39%) Gaps:169/622 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   984 KLMENLRQLEETEALTKWQNIIQYCRDNSELFVDDSFPPAPKSLYYN---PASGAGEGNPVVQWR 1045
            ||.:|          .|:|.:.|.|..:..||.|.:|.|...||::|   |..        |.|:
  Rat     6 KLFKN----------QKYQELKQDCMKDGRLFCDPTFLPENDSLFFNRLLPGK--------VVWK 52

  Fly  1046 RPHEINCDGGAYPPWAVFRTPLPSDICQGVLGNCWLLSALAVLAEREDLVKEVLVTKEICGQ--- 1107
            ||.:|:.|     |..:........:.||.|||..::||.:.||     |:|...||.|...   
  Rat    53 RPQDISDD-----PHLIVGNISNHQLIQGRLGNKAMISAFSCLA-----VQESHWTKAIPNHKEQ 107

  Fly  1108 -----------GAYQVRLCKDGKWTTVLVDDLLPCDKRGHLVYS-QAKRKQLWVPLIEKAVAKIH 1160
                       |.::.|....|:||.|::||||| ...|.||:| .....:.|..|:|||.||:.
  Rat   108 EWDPRKPEKYAGIFRFRFWHFGEWTEVVIDDLLP-TINGDLVFSFSTSMNEFWNALLEKAYAKLL 171

  Fly  1161 GCYEALVSGRAIEGLATLTGAPCESIPLQASSLPMPSEDELDKDLIWAQLLSSRCVRFLMGA--S 1223
            ||||||......:.:...||...|.|.:|........|   :|..::.:|..:    |..|.  |
  Rat   172 GCYEALDGLTITDIIMDFTGTLAEIIDMQKGRYTDLVE---EKYKLFGELYKT----FTKGGLIS 229

  Fly  1224 CGGGNMKVDEEEYQQK-GLRPRHAYSVLDVKDIQ-GHRL-----------LKLRNPWGHYSWRGD 1275
            |...:...:|:|.:.. ||...:.|::.|::.:: |.||           ::||||.|...|.|.
  Rat   230 CSIESPSQEEQEVETDWGLLKGYTYTMTDIRKLRLGERLVEVFSTEKLYMVRLRNPLGRQEWSGP 294

  Fly  1276 WSDDSSLW-----TDDLRDALMPHGASEGVFWISFEDVLNYFDCIDICKVRSGWNEVRLQGTLQP 1335
            ||:.|..|     ||.....|:.  :.:|.||:|.||..:.|..:::|  |:..|.|..:..|:.
  Rat   295 WSEISEEWQQLTVTDRKNLGLVM--SDDGEFWMSLEDFCHNFHKLNVC--RNVNNPVFGRKELES 355

  Fly  1336 LCSISCVLL-----------------TVLEPTEAEFTLFQEGQRNSEKSQRSQLDLCVVIFRT-R 1382
            :  :.|..:                 |.|:..:..||:.::|.:.....|:..|       || |
  Rat   356 V--VGCWTVDDDPLMNRSGGCYNNRDTFLQNPQYIFTVPEDGHKVIMSLQQKDL-------RTYR 411

  Fly  1383 SPAAPE---IG---RLVEHSKR--------QVRGFVGCH---------KMLERDIYLLVCLAFNH 1424
            ....|:   ||   ..||.::|        |.|.....:         |.|::..|:||...|.|
  Rat   412 RMGRPDNYIIGFELFKVEMNRRFRLHHLYIQERAGTSTYIDTRTVFLSKYLKKGNYVLVPTMFQH 476

  Fly  1425 WHTGIEDPHQYPQCILAIHSSKRLLVEQISPSPHLLADAIISLTLTKGQRHEGREGMTAYYLTKG 1489
            ..|                  ...|:...|..|..|.:  ::|.:.|         |:.:.|.:|
  Rat   477 GRT------------------SEFLLRIFSEVPVQLRE--LTLDMPK---------MSCWNLARG 512

  Fly  1490 WAGLVVMV--------ENRHENKWIH----VKCDCQE 1514
            :..:|..:        |.::.|:.::    :||..:|
  Rat   513 YPKVVTQITVHSAEGLEKKYANETVNPYLIIKCGKEE 549

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
solNP_476738.3 zf-RanBP 6..34 CDD:279035
RanBP2-type Zn finger 10..29 CDD:275376
zf-RanBP 135..164 CDD:279035
zf-RanBP 643..672 CDD:279035
RanBP2-type Zn finger 647..667 CDD:275375
zf-RanBP 704..731 CDD:279035
RanBP2-type Zn finger 708..727 CDD:275376
zf-RanBP 747..774 CDD:279035
RanBP2-type Zn finger 749..768 CDD:275376
zf-RanBP 927..954 CDD:279035
RanBP2-type Zn finger 931..950 CDD:275376
CysPc 1001..1328 CDD:128526 106/364 (29%)
Capn6NP_113996.2 CysPc 13..351 CDD:128526 107/367 (29%)
Domain III 344..495 33/177 (19%)
Calpain_III 349..497 CDD:238132 32/176 (18%)
C2_Calpain 514..639 CDD:176011 6/36 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0045
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D704215at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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