DRSC/TRiP Functional Genomics Resources

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Protein Alignment sol and capn1

DIOPT Version :9

Sequence 1:NP_476738.3 Gene:sol / 44014 FlyBaseID:FBgn0003464 Length:1594 Species:Drosophila melanogaster
Sequence 2:NP_001013632.1 Gene:capn1 / 541455 XenbaseID:XB-GENE-990196 Length:713 Species:Xenopus tropicalis


Alignment Length:482 Identity:141/482 - (29%)
Similarity:195/482 - (40%) Gaps:124/482 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly  1001 WQNIIQYCRDNSELFVDDSFPPAPKSLYY---NPASGAGEGNPVVQWRRPHEINCDGGAYPPWAV 1062
            :..|:..|..|..||.||:|||:..||.:   .|.|....|   |:|.||.::..:     |..:
 Frog    42 YDRILHECLQNRTLFKDDTFPPSAYSLGFKELGPNSSKTYG---VKWVRPSQLVSN-----PQFI 98

  Fly  1063 FRTPLPSDICQGVLGNCWLLSALAVLAEREDLVKEVLVTKEICGQ-------GAYQVRLCKDGKW 1120
            ......:|||||.||:||||:|:|.|...:.::..|:..    ||       |.:..:|.:.|:|
 Frog    99 VDGATRTDICQGALGDCWLLAAIASLTLNDTILHRVVPH----GQSFQDNYAGVFHFQLWQFGEW 159

  Fly  1121 TTVLVDDLLPCDKRGHLVY-SQAKRKQLWVPLIEKAVAKIHGCYEALVSGRAIEGLATLTGAPCE 1184
            ..|::||.||. |.|.||: ..|...:.|..|:|||.||.:||||||..|...||....||...|
 Frog   160 VDVVIDDYLPV-KDGKLVFVHSASGNEFWSALLEKAYAKANGCYEALSGGSTSEGFEDFTGGVTE 223

  Fly  1185 SIPLQASSLPMPSEDELDKDLIWAQLLSSRCVR-FLMGASCGGGNMKVDEEEYQQKGLRPRHAYS 1248
            ...::          :..|||.  .::.....| .|||.|. ......|.|....|.|...||||
 Frog   224 WYEMK----------KAPKDLF--SIIMKAVERGSLMGCSI-DITSATDMEAVTFKKLVKGHAYS 275

  Fly  1249 VLDVKDI----QGHRLLKLRNPWGHYSWRGDWSDDSSLW-------TDDLRDALMPHGASEGVFW 1302
            |...|:|    :..:|:::|||||...|.|.|||:||.|       :.|||..:     .:|.||
 Frog   276 VTGAKEINFRGRSQKLIRMRNPWGEVEWTGAWSDNSSEWNSVDAADSQDLRIKM-----EDGEFW 335

  Fly  1303 ISFEDVLNYFDCIDIC----------KVRSGWNEVRLQGT------------------LQPLCSI 1339
            ::|||.|..|..::||          |.|. ||.....|.                  :.|...|
 Frog   336 MAFEDFLREFSRLEICNLTPDALTARKYRK-WNTTVFNGNWRKGSTAGGCRNFPATFWINPQFKI 399

  Fly  1340 ---------------SCVLLTVLEPTEAEFTLFQEGQRNSEKSQRSQLDLCVVIFRTRSPAAPEI 1389
                           .|..|..|.            |::..|.:|...|:            ..|
 Frog   400 KLDEEDDDDDFGSEKGCTFLLALM------------QKDKRKERRFGKDM------------ETI 440

  Fly  1390 GRLVEHSKRQVRGFVGCHKMLERDIYL 1416
            |..|.....|..|..|.|  |:||.:|
 Frog   441 GFAVYEVPSQFHGQSGVH--LKRDFFL 465

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
solNP_476738.3 zf-RanBP 6..34 CDD:279035
RanBP2-type Zn finger 10..29 CDD:275376
zf-RanBP 135..164 CDD:279035
zf-RanBP 643..672 CDD:279035
RanBP2-type Zn finger 647..667 CDD:275375
zf-RanBP 704..731 CDD:279035
RanBP2-type Zn finger 708..727 CDD:275376
zf-RanBP 747..774 CDD:279035
RanBP2-type Zn finger 749..768 CDD:275376
zf-RanBP 927..954 CDD:279035
RanBP2-type Zn finger 931..950 CDD:275376
CysPc 1001..1328 CDD:128526 120/359 (33%)
capn1NP_001013632.1 Peptidase_C2 56..352 CDD:366222 111/326 (34%)
Calpain_III 373..518 CDD:366446 21/119 (18%)
EFh_PEF_CAPN1 545..713 CDD:320073
EF-hand motif 545..573 CDD:320073
EF-hand motif 588..617 CDD:320073
EF-hand motif 618..648 CDD:320073
EF-hand motif 654..682 CDD:320073
EF-hand motif 684..713 CDD:320073
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D704215at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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