DRSC/TRiP Functional Genomics Resources

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Protein Alignment sol and capn1

DIOPT Version :10

Sequence 1:NP_476738.3 Gene:sol / 44014 FlyBaseID:FBgn0003464 Length:1594 Species:Drosophila melanogaster
Sequence 2:NP_001013632.1 Gene:capn1 / 541455 XenbaseID:XB-GENE-990196 Length:713 Species:Xenopus tropicalis


Alignment Length:482 Identity:141/482 - (29%)
Similarity:195/482 - (40%) Gaps:124/482 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly  1001 WQNIIQYCRDNSELFVDDSFPPAPKSLYY---NPASGAGEGNPVVQWRRPHEINCDGGAYPPWAV 1062
            :..|:..|..|..||.||:|||:..||.:   .|.|....|   |:|.||.::..:     |..:
 Frog    42 YDRILHECLQNRTLFKDDTFPPSAYSLGFKELGPNSSKTYG---VKWVRPSQLVSN-----PQFI 98

  Fly  1063 FRTPLPSDICQGVLGNCWLLSALAVLAEREDLVKEVLVTKEICGQ-------GAYQVRLCKDGKW 1120
            ......:|||||.||:||||:|:|.|...:.::..|:..    ||       |.:..:|.:.|:|
 Frog    99 VDGATRTDICQGALGDCWLLAAIASLTLNDTILHRVVPH----GQSFQDNYAGVFHFQLWQFGEW 159

  Fly  1121 TTVLVDDLLPCDKRGHLVY-SQAKRKQLWVPLIEKAVAKIHGCYEALVSGRAIEGLATLTGAPCE 1184
            ..|::||.||. |.|.||: ..|...:.|..|:|||.||.:||||||..|...||....||...|
 Frog   160 VDVVIDDYLPV-KDGKLVFVHSASGNEFWSALLEKAYAKANGCYEALSGGSTSEGFEDFTGGVTE 223

  Fly  1185 SIPLQASSLPMPSEDELDKDLIWAQLLSSRCVR-FLMGASCGGGNMKVDEEEYQQKGLRPRHAYS 1248
            ...::          :..|||.  .::.....| .|||.|. ......|.|....|.|...||||
 Frog   224 WYEMK----------KAPKDLF--SIIMKAVERGSLMGCSI-DITSATDMEAVTFKKLVKGHAYS 275

  Fly  1249 VLDVKDI----QGHRLLKLRNPWGHYSWRGDWSDDSSLW-------TDDLRDALMPHGASEGVFW 1302
            |...|:|    :..:|:::|||||...|.|.|||:||.|       :.|||..:     .:|.||
 Frog   276 VTGAKEINFRGRSQKLIRMRNPWGEVEWTGAWSDNSSEWNSVDAADSQDLRIKM-----EDGEFW 335

  Fly  1303 ISFEDVLNYFDCIDIC----------KVRSGWNEVRLQGT------------------LQPLCSI 1339
            ::|||.|..|..::||          |.|. ||.....|.                  :.|...|
 Frog   336 MAFEDFLREFSRLEICNLTPDALTARKYRK-WNTTVFNGNWRKGSTAGGCRNFPATFWINPQFKI 399

  Fly  1340 ---------------SCVLLTVLEPTEAEFTLFQEGQRNSEKSQRSQLDLCVVIFRTRSPAAPEI 1389
                           .|..|..|.            |::..|.:|...|:            ..|
 Frog   400 KLDEEDDDDDFGSEKGCTFLLALM------------QKDKRKERRFGKDM------------ETI 440

  Fly  1390 GRLVEHSKRQVRGFVGCHKMLERDIYL 1416
            |..|.....|..|..|.|  |:||.:|
 Frog   441 GFAVYEVPSQFHGQSGVH--LKRDFFL 465

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
solNP_476738.3 zf-RanBP 6..34 CDD:395516
RanBP2-type Zn finger 10..29 CDD:275376
zf-RanBP 135..164 CDD:395516
zf-RanBP 643..672 CDD:395516
RanBP2-type Zn finger 647..667 CDD:275375
zf-RanBP 704..731 CDD:395516
RanBP2-type Zn finger 708..727 CDD:275376
zf-RanBP 747..774 CDD:395516
RanBP2-type Zn finger 749..768 CDD:275376
zf-RanBP 927..954 CDD:395516
CysPc 1001..1328 CDD:128526 120/359 (33%)
capn1NP_001013632.1 Peptidase_C2 56..352 CDD:459889 111/326 (34%)
Calpain_III 364..523 CDD:238132 24/129 (19%)
EFh_PEF_CAPN1 545..713 CDD:320073
EF-hand motif 545..573 CDD:320073
EF-hand motif 588..617 CDD:320073
EF-hand motif 618..648 CDD:320073
EF-hand motif 654..682 CDD:320073
EF-hand motif 684..713 CDD:320073
Blue background indicates that the domain is not in the aligned region.

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