DRSC/TRiP Functional Genomics Resources

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Protein Alignment sol and capn2a

DIOPT Version :9

Sequence 1:NP_476738.3 Gene:sol / 44014 FlyBaseID:FBgn0003464 Length:1594 Species:Drosophila melanogaster
Sequence 2:NP_001013519.1 Gene:capn2a / 541374 ZFINID:ZDB-GENE-050320-69 Length:698 Species:Danio rerio


Alignment Length:649 Identity:166/649 - (25%)
Similarity:259/649 - (39%) Gaps:167/649 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly  1003 NIIQY-----------CRDNSELFVDDSFPPAPKSLYYN---PASGAGEGNPVVQWRRPHEINCD 1053
            |.::|           |....|||.|.:||.||::|.:|   |.|....|   |:|:||.::|..
Zfish    23 NAVKYLNQNFETLRSECLSRGELFCDPAFPAAPEALGFNELGPRSSKTRG---VEWKRPGQLNSS 84

  Fly  1054 -----GGAYPPWAVFRTPLPSDICQGVLGNCWLLSALAVLAEREDLVKEVLVTKEICGQ---GAY 1110
                 |||      .||    |||||.||:||||:|:|.|...||::..|:.:.:..||   |.:
Zfish    85 PEFIVGGA------TRT----DICQGALGDCWLLAAIASLTLNEDVLARVVPSDQGFGQDYAGIF 139

  Fly  1111 QVRLCKDGKWTTVLVDDLLPCDKRGHLVY-SQAKRKQLWVPLIEKAVAKIHGCYEALVSGRAIEG 1174
            ..:..:.|:|..|:|||.|| .:.|.|:: ......:.|..|:|||.||::||||||..|...||
Zfish   140 HFQFWQFGEWVDVVVDDRLP-TRDGELLFVHSVTGSEFWSALLEKAYAKVNGCYEALSGGSTTEG 203

  Fly  1175 LATLTGAPCESIPLQASSLPMPSEDELDKDLIWAQLLSSRCVRFLMGASCGGGNMKVDEEEYQQK 1239
            ....||...|...|:  |.|......:.|.|....||.  |...:..|:        |.|....:
Zfish   204 FEDFTGGIAEMYELK--SAPTNLFQIIKKALDSGALLG--CSIDITSAA--------DSEAVTYQ 256

  Fly  1240 GLRPRHAYSVLDVKDI----QGHRLLKLRNPWGHYSWRGDWSDDSSLWTDDLRDALMPH-----G 1295
            .|...||||:....::    :..:|:::|||||...|.|.|||:||.|     :|:.|.     .
Zfish   257 KLVKGHAYSLTGATEVNYRSRKEKLVRVRNPWGQVEWTGAWSDNSSEW-----NAVDPSERENVK 316

  Fly  1296 ASEGVFWISFEDVLNYFDCIDICKVR---------SGWNEVRLQGT------------------L 1333
            :.:|.||:||.|.:..:..::||.:.         ..|:..:..||                  :
Zfish   317 SEDGEFWMSFSDFVRQYSRLEICTLTPDTLTSDSLKHWSVCKFDGTWRKGSTAGGCRNHPYTFWM 381

  Fly  1334 QPLCSISCVLLTVLE-----PTEAE------FTLFQEGQRNSEKSQRSQLDLCVVIFRTRSP--A 1385
            .|...|.      ||     |.:.|      ..|.|:.:|...|:......:...|:...|.  .
Zfish   382 NPQFKIK------LEEEDDDPDDNEVGCSVVIGLIQKNRRKMRKAGEDMHTIGYAIYEVPSQFHG 440

  Fly  1386 APEIGR-----LVEHSKRQVRGFVGCHKMLER-----DIYLLVCLAFNHWHTGIEDPHQYPQCIL 1440
            ..|:..     |....|.:...|:...::..|     ..||:|...|        |||:.....:
Zfish   441 QKEVHLDKNYFLTHAQKARSETFINLREVSTRFKLPPGEYLIVPSTF--------DPHKNGDFCV 497

  Fly  1441 AIHSSKRLLVEQI-SPSPHLLADAIISLTLTKGQRHEGREGMTAYYLTKGWAGLVV------MVE 1498
            .:.|.|:..::|. .|....:.|.::|       ..|         :..|:.||..      |..
Zfish   498 RVFSEKQSEMQQCDDPIEANVDDEMVS-------EEE---------VDSGFRGLFTKLAGDDMEI 546

  Fly  1499 NRHENKWIHVKCDCQESYNVVSTRGELKT----VDSVPPLQRQVIIVLTQLEGSGGFSIAHRLT 1558
            :..|.:.|..|        :|:.|.::||    :|:.     :|::.|....|:|...:....|
Zfish   547 SASELRTIFNK--------IVAKRTDIKTDGFSLDTC-----RVMVNLMDESGNGKLGLTEFAT 597

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
solNP_476738.3 zf-RanBP 6..34 CDD:279035
RanBP2-type Zn finger 10..29 CDD:275376
zf-RanBP 135..164 CDD:279035
zf-RanBP 643..672 CDD:279035
RanBP2-type Zn finger 647..667 CDD:275375
zf-RanBP 704..731 CDD:279035
RanBP2-type Zn finger 708..727 CDD:275376
zf-RanBP 747..774 CDD:279035
RanBP2-type Zn finger 749..768 CDD:275376
zf-RanBP 927..954 CDD:279035
RanBP2-type Zn finger 931..950 CDD:275376
CysPc 1001..1328 CDD:128526 116/365 (32%)
capn2aNP_001013519.1 Peptidase_C2 46..339 CDD:279042 108/323 (33%)
Calpain_III 354..505 CDD:279416 29/164 (18%)
EF-hand_8 542..601 CDD:290545 14/69 (20%)
EFh 575..630 CDD:298682 5/28 (18%)
FRQ1 602..>694 CDD:227455
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D704215at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

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