DRSC/TRiP Functional Genomics Resources

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Protein Alignment sol and capn13

DIOPT Version :9

Sequence 1:NP_476738.3 Gene:sol / 44014 FlyBaseID:FBgn0003464 Length:1594 Species:Drosophila melanogaster
Sequence 2:NP_001008025.1 Gene:capn13 / 493387 XenbaseID:XB-GENE-6045506 Length:763 Species:Xenopus tropicalis


Alignment Length:620 Identity:149/620 - (24%)
Similarity:237/620 - (38%) Gaps:186/620 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly  1001 WQNIIQYCRDNSELFVDDSFPPAPKSLYYNPASGAGEGNPV--------VQWRRPHEINCDG--- 1054
            :.:|.:.|....:||.|::||.:..|:          |..:        ::|.||.||..|.   
 Frog    34 FDSIRESCYSRRQLFEDETFPASVSSI----------GQKLLPKDQLLSIKWERPKEIQSDARLL 88

  Fly  1055 --GAYPPWAVFRTPLPSDICQGVLGNCWLLSALAVLAEREDLVKEVLVTKEICGQ-------GAY 1110
              ||    ::|      |:.||.||:||:|:|:..|...:..: ::::.|:   |       ||:
 Frog    89 VDGA----SIF------DMVQGYLGDCWVLAAVGALTLHQKFL-DIVIPKD---QEFNYKYAGAF 139

  Fly  1111 QVRLCKDGKWTTVLVDDLLPCDKRGHLVYSQAKRKQLWVPLIEKAVAKIHGCYEALVSGRAIEGL 1175
            ..|..:.|:|..|::||.||.....:|........:.|..|:|||.||:.|.|:.|..|...|.|
 Frog   140 HFRFWQFGEWVDVVIDDRLPTLNGKYLSVHPRSDNEFWPTLLEKAYAKLRGSYQNLHWGYISEAL 204

  Fly  1176 ATLTGAPCESIPLQASSLPMPSEDELDKDLIWAQLLSSRCVRFLMGASCGGGNMKVDEEEYQQKG 1240
            ...:|.     .|....|..|.:|.  :|::.|...|..    |||::..||....:.|  .|.|
 Frog   205 VDFSGG-----VLVEFDLTKPPQDL--RDIVIAAAKSGS----LMGSNTPGGKQSGNPE--LQNG 256

  Fly  1241 LRPRHAYSVLDVKDIQ----GHRLLKLRNPWGHYSWRGDWSDDSSLW---TDDLRDALMPHGASE 1298
            |...|||:|.|...::    ...|:::.||||...|.|.|||::..|   ..|:|..|... .::
 Frog   257 LVQGHAYTVTDATQVEYKNGTEDLVRVWNPWGKGEWNGRWSDNAPQWDRVRADVRQKLNVQ-KND 320

  Fly  1299 GVFWISFEDVLNYFDCIDICKVRSGW----NEVRLQGTLQPLCSISCVLLTVLEPTEAEFTLFQE 1359
            |.||:|.:|.|..|.|..||.....:    |..|...||                     |.|..
 Frog   321 GEFWMSCQDFLQNFSCASICNHTPAYFDFDNPKRTWQTL---------------------TYFSR 364

  Fly  1360 GQRNSEKSQ-RSQLDLCVVIFRTRSPAAPEIGRLVEHSKRQVRGFVGCHKMLERDIYLLVCLAFN 1423
            ..|.|..:. .|:.||    :|.     |:....|..|:...||:.....:::            
 Frog   365 WVRGSTAAGCSSKEDL----WRN-----PQFVISVSDSEGMKRGYNVTVALMQ------------ 408

  Fly  1424 HWHTGIEDPHQYPQCILAI-------------------HSSKRLL----VE-QIS---------- 1454
                .:|:.|:|.|..:.|                   :|:|:.:    .| |||          
 Frog   409 ----SLENEHKYSQRWMGIGFALCRVASMGVKGISQQNYSAKQAMDVINTEIQISREVTRSFMAP 469

  Fly  1455 PSPHLLADAIISLTLTKGQRHE---------------------GREGMTAYYLTKGWAGLVVMVE 1498
            |..::    :|..|.:|||..|                     .|||...:|.:.|        .
 Frog   470 PGTYV----VIPFTESKGQESEFLLRIFLKTKEIDKFQDTKTVPREGNQTFYPSNG--------G 522

  Fly  1499 NRHENKWIHVKCDCQESY-NVVSTRGELKTVDSVP 1532
            :|:::.....:.|.|..| |  .||...::..|:|
 Frog   523 SRYQDPKPKPRDDNQPMYPN--ETRARNQSSSSLP 555

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
solNP_476738.3 zf-RanBP 6..34 CDD:279035
RanBP2-type Zn finger 10..29 CDD:275376
zf-RanBP 135..164 CDD:279035
zf-RanBP 643..672 CDD:279035
RanBP2-type Zn finger 647..667 CDD:275375
zf-RanBP 704..731 CDD:279035
RanBP2-type Zn finger 708..727 CDD:275376
zf-RanBP 747..774 CDD:279035
RanBP2-type Zn finger 749..768 CDD:275376
zf-RanBP 927..954 CDD:279035
RanBP2-type Zn finger 931..950 CDD:275376
CysPc 1001..1328 CDD:128526 101/357 (28%)
capn13NP_001008025.1 Peptidase_C2 48..341 CDD:366222 96/330 (29%)
Calpain_III 364..497 CDD:366446 29/161 (18%)
EFh_PEF_CAPN13_14 595..763 CDD:320070
EF-hand motif 595..622 CDD:320070
EF-hand motif 639..668 CDD:320070
EF-hand motif 669..699 CDD:320070
EF-hand motif 705..733 CDD:320070
EF-hand motif 735..763 CDD:320070
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D704215at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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