DRSC/TRiP Functional Genomics Resources

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Protein Alignment sol and Capn12

DIOPT Version :9

Sequence 1:NP_476738.3 Gene:sol / 44014 FlyBaseID:FBgn0003464 Length:1594 Species:Drosophila melanogaster
Sequence 2:XP_038967508.1 Gene:Capn12 / 308476 RGDID:1307341 Length:766 Species:Rattus norvegicus


Alignment Length:465 Identity:137/465 - (29%)
Similarity:203/465 - (43%) Gaps:94/465 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   998 LTKWQN---IIQYCRDNSELFVDDSFPPAPKSLYYNPASGAGEGNPVVQWRRPHEINCDGGAYPP 1059
            |.|.||   |...|.|:..||.|..||..|.:|.|:......|....|:|:||||...:     |
  Rat    26 LFKGQNYEAIRAACLDSGILFRDPCFPAGPDALGYDKLGPDSEKAKGVEWKRPHEFCAE-----P 85

  Fly  1060 WAVFRTPLPSDICQGVLGNCWLLSALAVLAEREDLVKEVLVTKEICGQ-------GAYQVRLCKD 1117
            ..:......:|:|||.|||||||:|.|.|.....|:..|:..    ||       |.:..:|.:.
  Rat    86 QFICEDMSRTDVCQGSLGNCWLLAAAASLTLYPRLLYRVVPP----GQGFQDGYAGVFHFQLWQF 146

  Fly  1118 GKWTTVLVDDLLPCDKRGHLVYSQA-KRKQLWVPLIEKAVAKIHGCYEALVSGRAIEGLATLTGA 1181
            |:|..|:|||.||. :.|.|::.:: :|.:.|.||:|||.||:||.||.:..|...|.....||.
  Rat   147 GRWVDVVVDDKLPV-RDGKLLFVRSEQRNEFWAPLLEKAYAKLHGSYEVMRGGHMNEAFVDFTGG 210

  Fly  1182 PCESIPLQASSLPMPSEDELDKDLIWAQLLSSRCVRFLMGASC--GGGNMKVDEEEYQQKGLRPR 1244
            ..|.:.|:.::   |.        ::|.|..:.....|:||:.  ..|.::.||      ||...
  Rat   211 VGEVLYLRQNT---PG--------VFAALRHALAKESLVGATALSDRGEIRTDE------GLVKG 258

  Fly  1245 HAYSVLDVKDIQ-GH---RLLKLRNPWGHYSWRGDWSDDSSLW---TDDLRDALMPHGASEGVFW 1302
            |||||.....:. |.   |||:||||||...|.|.|||....|   ..:.||||:.. ..:|.||
  Rat   259 HAYSVTGTHKMSLGFTKVRLLRLRNPWGRVEWSGPWSDSCPRWDMLPSEWRDALLVK-KEDGEFW 322

  Fly  1303 ISFEDVLNYFDCIDICKVR----------SGWNEVRLQG-------------TLQPLCSISCVLL 1344
            :..:|.|.:|:.:.||.:.          .||:....||             :.:...:.....|
  Rat   323 MELQDFLTHFNTVQICSLSPEVLGPSPAGGGWHIHTFQGRWVRGFNSGGSQPSAENFWTNPQFRL 387

  Fly  1345 TVLEPTEAEFTLFQE------GQRNSEKSQRSQLDLCVVIFRTRSPAAPEIGRLVEHSKRQVRG- 1402
            |:|||.|.|....:|      |...:..::..::..|.|:.           .|::.::|.:|. 
  Rat   388 TLLEPDEEEDEDDEEGPWGGWGAAGARPARGGRVPKCTVLL-----------SLIQRNRRCLRAK 441

  Fly  1403 -----FVGCH 1407
                 .||.|
  Rat   442 GLTYLTVGFH 451

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
solNP_476738.3 zf-RanBP 6..34 CDD:279035
RanBP2-type Zn finger 10..29 CDD:275376
zf-RanBP 135..164 CDD:279035
zf-RanBP 643..672 CDD:279035
RanBP2-type Zn finger 647..667 CDD:275375
zf-RanBP 704..731 CDD:279035
RanBP2-type Zn finger 708..727 CDD:275376
zf-RanBP 747..774 CDD:279035
RanBP2-type Zn finger 749..768 CDD:275376
zf-RanBP 927..954 CDD:279035
RanBP2-type Zn finger 931..950 CDD:275376
CysPc 1001..1328 CDD:128526 116/356 (33%)
Capn12XP_038967508.1 Peptidase_C2 46..339 CDD:395523 107/320 (33%)
Calpain_III 352..530 CDD:238132 21/111 (19%)
EFh_PEF 567..693 CDD:355382
EF-hand motif 596..623 CDD:320054
EF-hand motif 624..654 CDD:320054
EF-hand motif 660..688 CDD:320054
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0045
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D704215at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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