DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sol and Capn2

DIOPT Version :9

Sequence 1:NP_476738.3 Gene:sol / 44014 FlyBaseID:FBgn0003464 Length:1594 Species:Drosophila melanogaster
Sequence 2:NP_058812.1 Gene:Capn2 / 29154 RGDID:2268 Length:700 Species:Rattus norvegicus


Alignment Length:661 Identity:169/661 - (25%)
Similarity:259/661 - (39%) Gaps:185/661 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   986 MENLRQLEETEALTKWQNIIQY-----------CRDNSELFVDDSFPPAPKSLYY---NPASGAG 1036
            |:..:..|..|.|...:..|:|           |.:...||.|.|||..|.||.:   .|.|...
  Rat     6 MKLAKDREAAEGLGSHERAIKYLNQDYETLRNECLEAGALFQDPSFPALPSSLGFKELGPYSSKT 70

  Fly  1037 EGNPVVQWRRPHEINCD-----GGAYPPWAVFRTPLPSDICQGVLGNCWLLSALAVLAEREDLVK 1096
            .|   ::|:||.||..|     |||      .||    |||||.||:||||:|:|.|...|:::.
  Rat    71 RG---IEWKRPTEICADPQFIIGGA------TRT----DICQGALGDCWLLAAIASLTLNEEILA 122

  Fly  1097 EVLVTKEICGQ---GAYQVRLCKDGKWTTVLVDDLLPCDKRGHLVY-SQAKRKQLWVPLIEKAVA 1157
            .|:...:...:   |.:..:..:.|:|..|:|||.|| .|.|.|:: ..|:..:.|..|:|||.|
  Rat   123 RVVPLDQSFQENYAGIFHFQFWQYGEWVEVVVDDRLP-TKDGELLFVHSAEGSEFWSALLEKAYA 186

  Fly  1158 KIHGCYEALVSGRAIEGLATLTGAPCESIPLQASSLPMPSEDE-LDKDLIWAQLLSSRCVRFLMG 1221
            ||:||||||..|...||....||...|...|:.   |.|:..: :.|.|....||.  |...:..
  Rat   187 KINGCYEALSGGATTEGFEDFTGGIAEWYELRK---PPPNLFKIIQKALEKGSLLG--CSIDITS 246

  Fly  1222 ASCGGGNMKVDEEEYQQKGLRPRHAYSVLDVKDIQG----HRLLKLRNPWGHYSWRGDWSDDSSL 1282
            |:        |.|....:.|...|||||...::::.    .:|:::|||||...|.|.|:|:...
  Rat   247 AA--------DSEAVTYQKLVKGHAYSVTGAEEVESSGSLQKLIRIRNPWGQVEWTGKWNDNCPS 303

  Fly  1283 W--TDDLRDALMPHGASEGVFWISFEDVLNYFDCIDICKVR---------SGWNEVRLQGT---- 1332
            |  .|....|.:.....:|.||:||.|.|.::..::||.:.         ..|...::.|.    
  Rat   304 WNTVDPEVRANLTERQEDGEFWMSFSDFLRHYSRLEICNLTPDTLTCDSYKKWKLTKMDGNWRRG 368

  Fly  1333 --------------LQPLCSISCVLLTVLEPTEAEFTLFQEGQRNSEKSQRSQLDLCVVIFRTRS 1383
                          :.|.     .|:.:.|..|.:    ::|:|.           |..:     
  Rat   369 STAGGCRNYPNTFWMNPQ-----YLIKLEEEDEDD----EDGERG-----------CTFL----- 408

  Fly  1384 PAAPEIGRLVEHSKRQVRGFVGCHKMLERDIYLLVCLAFNHWHT---GIEDPHQYPQCILA---I 1442
                 :|.:.:|.:||       .||.|            ..||   ||   ::.|:.:..   |
  Rat   409 -----VGLIQKHRRRQ-------RKMGE------------DMHTIGFGI---YEVPEELTGQTNI 446

  Fly  1443 HSSKRLLVEQISPSPHLLADAIISLTLTKGQRHEGREGMTAYYLTKGWAGLVVMVENRHENK--W 1505
            |.||...   ::......:|..|:|          ||.:..:.|..|...||......|:|.  .
  Rat   447 HLSKNFF---LTTRARERSDTFINL----------REVLNRFKLPPGEYVLVPSTFEPHKNGDFC 498

  Fly  1506 IHVKCDCQESYNVVSTRGE--LKTVDS----------------------VPPLQRQVII--VLTQ 1544
            |.|..:.:..|..|....|  ::.:::                      :...:.|.|:  ||.:
  Rat   499 IRVFSEKKADYQTVDDEIEANIEEIEANEEDIGDGFRRLFAQLAGEDAEISAFELQTILRRVLAK 563

  Fly  1545 LEG--SGGFSI 1553
            .|.  |.||||
  Rat   564 REDIKSDGFSI 574

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
solNP_476738.3 zf-RanBP 6..34 CDD:279035
RanBP2-type Zn finger 10..29 CDD:275376
zf-RanBP 135..164 CDD:279035
zf-RanBP 643..672 CDD:279035
RanBP2-type Zn finger 647..667 CDD:275375
zf-RanBP 704..731 CDD:279035
RanBP2-type Zn finger 708..727 CDD:275376
zf-RanBP 747..774 CDD:279035
RanBP2-type Zn finger 749..768 CDD:275376
zf-RanBP 927..954 CDD:279035
RanBP2-type Zn finger 931..950 CDD:275376
CysPc 1001..1328 CDD:128526 115/365 (32%)
Capn2NP_058812.1 Peptidase_C2 46..342 CDD:279042 109/322 (34%)
Domain III 345..514 40/233 (17%)
Calpain_III 356..507 CDD:279416 38/215 (18%)
Linker 515..529 1/13 (8%)
Domain IV 530..700 10/45 (22%)
EFh 577..631 CDD:238008
FRQ1 604..>696 CDD:227455
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0045
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D704215at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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