DRSC/TRiP Functional Genomics Resources

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Protein Alignment sol and clp-6

DIOPT Version :10

Sequence 1:NP_476738.3 Gene:sol / 44014 FlyBaseID:FBgn0003464 Length:1594 Species:Drosophila melanogaster
Sequence 2:NP_500081.2 Gene:clp-6 / 190738 WormBaseID:WBGene00000546 Length:627 Species:Caenorhabditis elegans


Alignment Length:593 Identity:151/593 - (25%)
Similarity:230/593 - (38%) Gaps:160/593 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   858 LPSLQQQRNSSSSGAI---PKRHSTGGSIVPRNISIAGLAN------------------------ 895
            |||:.::..|..:|:|   ..|..|  :::||:.|..||.|                        
 Worm    22 LPSIVKEFVSDYTGSIWDELLRQLT--ALIPRDSSGRGLTNIFSSGALESLVGNLISNASHEFFG 84

  Fly   896 YNLQQGQGVGSASVVSASGAGSGAGAVGASTSTKKWQCPACTYDNCAASVVCDICSSPRGLASAV 960
            .|.:.|:.:|:.       ||:....:|..             :|..:|:           ...|
 Worm    85 VNSENGEIIGAL-------AGNAMFNLGGE-------------NNSLSSI-----------GKVV 118

  Fly   961 LGEALGRKSVRVALTPADIRQESKLMENLRQLEETEALTKWQNIIQYCRDNSELFVDDSFPPAPK 1025
            |...:..|..|...:...::     .:.|...||.          |.|.|.:.||.|..||....
 Worm   119 LDNIVSGKFKRECHSYVPLK-----CQPLYFYEER----------QKCLDENRLFEDPQFPANNS 168

  Fly  1026 SLYYN--PASGAGEGNPVVQWRRPHEINCDGGAYPPWAVFRTPLPSDICQGVLGNCWLLSALAVL 1088
            |:||.  |.|.       :.|.||.:|..:     |..:.......|:.||.|||||.|:|.|.|
 Worm   169 SIYYKKPPKSH-------IVWLRPAKIFAN-----PRLIVNGKSRFDVRQGSLGNCWFLAAAATL 221

  Fly  1089 AEREDLVKEVLVTKEICGQ---GAYQVRLCKDGKWTTVLVDDLLPCDKRGHLVY-SQAKRKQLWV 1149
            |:|::|...|:...:...:   |.:..:..:.|:|..|::||.|| ...|.|:| |.....:.|.
 Worm   222 AQRDELFYRVVPPDQSFTENYAGIFHFQFWRYGEWVDVVIDDRLP-TVNGKLIYMSSQDGDECWG 285

  Fly  1150 PLIEKAVAKIHGCYEALVSGRAIEGLATLTGAPCESIPLQASSLPMPSEDELDKDLIWAQLLSSR 1214
            ||:|||.||::|.||.|..|...|.|...||...|...|.::          ||.:|.|.::...
 Worm   286 PLLEKAYAKLYGTYEHLDGGTTTEALEDFTGGLTEFYDLTST----------DKTMILAMIMKGM 340

  Fly  1215 CVRFLMGASCGGGNMKVD----EEEYQ-QKGLRPRHAYSVLDVKDIQGHR----LLKLRNPWGHY 1270
            .:..|...|       :|    |:|.| ..||...|||||..|..::..:    ||::|||||..
 Worm   341 QMGSLFACS-------IDPDPREKEAQLANGLVRGHAYSVTGVHTVETDKEKVALLRIRNPWGDT 398

  Fly  1271 SWRGDWSDDSSLW---TDDLRDALMPHGASEGVFWISFEDVLNYFDCIDICKVRSGWNEVRLQGT 1332
            .|.|||||.||||   ..:.|:.:......:|.||:..:|.:..|..:|.|.:.:.         
 Worm   399 EWNGDWSDKSSLWEQVDQEQREKMEFRIKEDGEFWMCLDDFMAQFANLDCCNLSAD--------- 454

  Fly  1333 LQPLCSISCVLLTVLEPTEAEFTLFQ---------EGQRNSEKS-----QRSQLDLCV-----VI 1378
                     |:..:.|.||.|....|         :|:..|.|.     ..::...|.     ..
 Worm   455 ---------VMHEITEMTEIEVMEKQSKQWIQKSADGEWCSRKGTAGGCSNNENTFCTNPQYETY 510

  Fly  1379 FRTRSPAA 1386
            ||..||::
 Worm   511 FRATSPSS 518

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
solNP_476738.3 zf-RanBP 6..34 CDD:395516
RanBP2-type Zn finger 10..29 CDD:275376
zf-RanBP 135..164 CDD:395516
zf-RanBP 643..672 CDD:395516
RanBP2-type Zn finger 647..667 CDD:275375
zf-RanBP 704..731 CDD:395516
RanBP2-type Zn finger 708..727 CDD:275376
zf-RanBP 747..774 CDD:395516
RanBP2-type Zn finger 749..768 CDD:275376
zf-RanBP 927..954 CDD:395516 2/26 (8%)
CysPc 1001..1328 CDD:128526 108/344 (31%)
clp-6NP_500081.2 Peptidase_C2 158..450 CDD:459889 103/321 (32%)
Calpain_III 473..624 CDD:238132 8/46 (17%)
Blue background indicates that the domain is not in the aligned region.

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