DRSC/TRiP Functional Genomics Resources

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Protein Alignment sol and tra-3

DIOPT Version :9

Sequence 1:NP_476738.3 Gene:sol / 44014 FlyBaseID:FBgn0003464 Length:1594 Species:Drosophila melanogaster
Sequence 2:NP_502751.1 Gene:tra-3 / 178385 WormBaseID:WBGene00006606 Length:648 Species:Caenorhabditis elegans


Alignment Length:566 Identity:140/566 - (24%)
Similarity:229/566 - (40%) Gaps:143/566 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly  1001 WQNIIQYCRDNSELFVDDSFPPAPKSLYYNPASGAGEGNPVVQWRRPHEINCDGGAYPPWAVFRT 1065
            ::.:.:.|....:.|||..|||..:||:......:.     :.|:||.|::.|     |......
 Worm    15 YEKLRKICIKKKQPFVDTLFPPTNQSLFLEQRQSSD-----IVWKRPGELHPD-----PHLFVEG 69

  Fly  1066 PLPSDICQGVLGNCWLLSALAVLAEREDLVKEVL--------VTKEICGQGAYQVRLCKDGKWTT 1122
            ..|:|:.||:|||||.:||.:.|.....|:.:|:        .||.... |.::.|..:.|||..
 Worm    70 ASPNDVTQGILGNCWFVSACSALTHNFKLLAQVIPDADDQEWSTKHAYA-GIFRFRFWRFGKWVE 133

  Fly  1123 VLVDDLLPCDKRGHLVYSQAKR-KQLWVPLIEKAVAKIHGCYEALVSGRAIEGLATLTGAPCESI 1186
            |::||||| .:.|.|:::::|. .:.|..|:|||.||::||||.||.|...:.|..::|...|::
 Worm   134 VVIDDLLP-TRDGKLLFARSKTPNEFWSALLEKAFAKLYGCYENLVGGHLSDALQDVSGGVAETL 197

  Fly  1187 PLQASSLPMPSEDELDKDLIWAQLLSSRCVRFLMGA---SCGGGNMKVDEEEYQQKGLRPRHAYS 1248
            .::......|::.||       :|.:.....|..||   :......|.:.||....||...|||:
 Worm   198 HVRKFLKDDPNDTEL-------KLFNDLKTAFDKGALVVAAIAARTKEEIEESLDCGLVKGHAYA 255

  Fly  1249 V-----LDVKD---------IQGHR----LLKLRNPWGHYSWRGDWSDDSSLWTDDLRDALMPHG 1295
            |     :||.:         |.|.:    |::|:||||...|.|.|||||..|.:.....|...|
 Worm   256 VSAVCTIDVTNPNERSFTSFIMGSKRKQNLIRLQNPWGEKEWNGAWSDDSPEWQNVSASQLSTMG 320

  Fly  1296 -------ASEGVFWISFEDVLNYFDCIDICKVRSGWNEVRLQGTLQPLCSISCVLLTVLEPTEAE 1353
                   :.:|.||:.:|..::||..|.:|::.:           ..:.|.|        .:..|
 Worm   321 VQPANSDSDDGDFWMPWESFVHYFTDISLCQLFN-----------TSVFSFS--------RSYDE 366

  Fly  1354 FTLFQEGQRNSEKS----------QRSQLDLC---VVIFRTRSPAAPEIGRLVEH------SKRQ 1399
            ..:|.|...|.:||          ...:...|   ..||...||....:..|:::      .||:
 Worm   367 QIVFSEWTTNGKKSGAPDDRAGGCHNFKATFCNNPQYIFDIPSPNCSVMFALIQNDPSEGLKKRE 431

  Fly  1400 VRGFVGCHKM----------------------------------LERDIYLLVCLAFNHWHTGIE 1430
            ....:|.|.|                                  |.|..|||:...|        
 Worm   432 PFVTIGMHVMKVENNRQYRVHTAMHPIAISDYASGRSVYLHLQSLPRGRYLLIPTTF-------- 488

  Fly  1431 DPHQYPQCILAIHSSKRLLVEQI---SPSPHLL----ADAIISLTL 1469
            .|.:....:|.::|.:.:....:   :|...||    |.::..||:
 Worm   489 APKEQTLFMLRVYSDEHIHFSPLTKHAPKLGLLKCKSAQSVTRLTI 534

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
solNP_476738.3 zf-RanBP 6..34 CDD:279035
RanBP2-type Zn finger 10..29 CDD:275376
zf-RanBP 135..164 CDD:279035
zf-RanBP 643..672 CDD:279035
RanBP2-type Zn finger 647..667 CDD:275375
zf-RanBP 704..731 CDD:279035
RanBP2-type Zn finger 708..727 CDD:275376
zf-RanBP 747..774 CDD:279035
RanBP2-type Zn finger 749..768 CDD:275376
zf-RanBP 927..954 CDD:279035
RanBP2-type Zn finger 931..950 CDD:275376
CysPc 1001..1328 CDD:128526 106/363 (29%)
tra-3NP_502751.1 CysPc 15..361 CDD:128526 107/375 (29%)
Calpain_III 362..511 CDD:238132 26/156 (17%)
C2_Calpain 526..646 CDD:176011 3/9 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0045
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D704215at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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