DRSC/TRiP Functional Genomics Resources

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Protein Alignment sol and clp-3

DIOPT Version :9

Sequence 1:NP_476738.3 Gene:sol / 44014 FlyBaseID:FBgn0003464 Length:1594 Species:Drosophila melanogaster
Sequence 2:NP_493052.3 Gene:clp-3 / 173089 WormBaseID:WBGene00000544 Length:752 Species:Caenorhabditis elegans


Alignment Length:333 Identity:89/333 - (26%)
Similarity:145/333 - (43%) Gaps:47/333 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly  1006 QYCRDNSELFVDDSFPPAPKSLY--YNPASGAGEGNPVVQWRRPHEINCDGGAYPPWAVFRTPLP 1068
            |.|.|...||.|..||....|:|  ..|...       :.|:||.|:..:     |..:......
 Worm   257 QKCLDEKRLFEDPQFPANNSSIYVKVRPKDH-------IVWKRPGELFAN-----PRLIGSDKTH 309

  Fly  1069 SDICQGVLGNCWLLSALAVLAEREDLVKEVLVTKEICGQ---GAYQVRLCKDGKWTTVLVDDLLP 1130
            .|:..|.|.|.|.||..|.|:.|::|...|:...:...:   |.:..:..:.|:|..|::||.||
 Worm   310 FDVKLGRLENRWFLSGAANLSLRDELFYRVVPPDQSFTEKYAGIFHFQFWRYGEWVDVVIDDRLP 374

  Fly  1131 CDKRGHLVY-SQAKRKQLWVPLIEKAVAKIHGCYEALVSGRAIEGL----ATLTGAPCESIPLQA 1190
             ...|.|.| |.....:.|.||:|||.||:.|.||.|......:.|    |:.||...:...:..
 Worm   375 -TVNGTLCYMSSPGGSEFWGPLLEKAYAKLLGTYEHLNDPYTEQALWQASASFTGGLTQWFDIFM 438

  Fly  1191 SSLPMPSEDELDKDLIWAQLLSSRCVRFLMGASCGGGNMKVDEEEYQQK-GLRPRHAYSVLDVK- 1253
            :          |:..:.|.::  |.|:  ||:.....|:.|:|:..:|| ||...:.|.:..|. 
 Worm   439 A----------DEMAVLAMIM--RGVQ--MGSLIVCLNIDVNEKGVRQKNGLIKGYGYCITGVNL 489

  Fly  1254 ---DIQGHRLLKLRNPWGHYSWRGDWSDDSSLW---TDDLRDALMPHGASEGVFWISFEDVLNYF 1312
               :.:...|:::|:|||...|:||:...|..|   ..:.|::.  ....:|.||:|.:|.:..|
 Worm   490 METEWEKAPLIRIRSPWGKVKWKGDFCYRSHRWFGLDKEKRESF--RIKEDGEFWMSLKDFMVEF 552

  Fly  1313 DCIDICKV 1320
            ..:..|.:
 Worm   553 TDVYCCNL 560

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
solNP_476738.3 zf-RanBP 6..34 CDD:279035
RanBP2-type Zn finger 10..29 CDD:275376
zf-RanBP 135..164 CDD:279035
zf-RanBP 643..672 CDD:279035
RanBP2-type Zn finger 647..667 CDD:275375
zf-RanBP 704..731 CDD:279035
RanBP2-type Zn finger 708..727 CDD:275376
zf-RanBP 747..774 CDD:279035
RanBP2-type Zn finger 749..768 CDD:275376
zf-RanBP 927..954 CDD:279035
RanBP2-type Zn finger 931..950 CDD:275376
CysPc 1001..1328 CDD:128526 89/333 (27%)
clp-3NP_493052.3 MDN1 <5..136 CDD:227596
CysPc 254..559 CDD:238004 88/330 (27%)
Calpain_III 582..732 CDD:238132
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0045
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D704215at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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