DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sol and Capn8

DIOPT Version :9

Sequence 1:NP_476738.3 Gene:sol / 44014 FlyBaseID:FBgn0003464 Length:1594 Species:Drosophila melanogaster
Sequence 2:NP_579843.2 Gene:Capn8 / 170808 RGDID:620085 Length:703 Species:Rattus norvegicus


Alignment Length:646 Identity:160/646 - (24%)
Similarity:232/646 - (35%) Gaps:227/646 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   990 RQLEETEALTKWQNIIQY-----------CRDNSELFVDDSFPPAPKSLYYNPASGAGEGNPVVQ 1043
            :|....|.|...||.::|           |.::..||.|..||..|.:|.|   ...|.|:|..|
  Rat    10 KQRAVAEGLGSNQNAVKYLGQDFETLRKQCLNSGVLFKDPEFPACPSALGY---KDLGPGSPDTQ 71

  Fly  1044 ---WRRPHEINCDGGAYPPWAVFRTPLPSDICQGVLGNCWLLSALAVLAEREDLVKEVLVTKEIC 1105
               |:||.|: |....:......||    ||.||.||:||||:|:|.|...|.|:..||...:..
  Rat    72 GIVWKRPTEL-CPNPQFIVGGATRT----DIRQGGLGDCWLLAAIASLTLNEKLLYRVLPRDQSF 131

  Fly  1106 GQ---GAYQVRLCKDGKWTTVLVDDLLPCDKRGHLVYSQAKR-KQLWVPLIEKAVAKIHGCYEAL 1166
            .:   |.:..:..:.|:|..|::||.|| .|.|.|::..::. .:.|..|:|||.||::|.||||
  Rat   132 QKDYAGIFHFQFWQYGEWVEVVIDDRLP-TKNGQLLFLHSEEGNEFWSALLEKAYAKLNGSYEAL 195

  Fly  1167 VSGRAIEGLATLTGAPCESIPLQASSLPMPSEDELDKDLIWAQLLSSRCVR--FLMGASCGGGNM 1229
            |.|..|||....||...|...|:     .|.|:        ...:..:.:|  .|:|.|......
  Rat   196 VGGSTIEGFEDFTGGISEFYDLK-----KPPEN--------LYYIIQKALRKGSLLGCSIDVSTA 247

  Fly  1230 KVDEEEYQQKGLRPRHAYSVLDVKDIQGH----RLLKLRNPWGHYSWRGDWSDDSSLWT--DDLR 1288
            ...|...:|| |...|||||..|:::..|    :|::||||||...|.|.|||::..|.  |..|
  Rat   248 AEAEATTRQK-LVKGHAYSVTGVEEVNFHGRPEKLIRLRNPWGEVEWSGAWSDNAPEWNYIDPRR 311

  Fly  1289 DALMPHGASEGVFWISFEDVLNYFDCIDICKVRSG---------WN------------------- 1325
            ...:...|.:|.||:||.|.|..:..::||.:...         ||                   
  Rat   312 KEELDKKAEDGEFWMSFSDFLKQYSRLEICNLSPDSLSSEEIHKWNLVLFNGRWTRGSTAGGCLN 376

  Fly  1326 -------------------EVRLQGTLQPLCSISCVLLTVLE----------------------- 1348
                               |.:.:||.:|.|:   |||.:::                       
  Rat   377 YPGTYWTNPQFKIHLDEVDEDQEEGTSEPCCT---VLLGLMQKNRRRQKRIGQGMLSIGYAVYQI 438

  Fly  1349 PTEAE----------FTLFQEGQRNS-------EKSQRSQL------------------DLCVVI 1378
            |.|.|          |.|.::....|       |.|.|.:|                  |.|:.:
  Rat   439 PKELESHTDAHLGRDFFLGRQPSTCSSTYMNLREVSSRVRLPPGQYLVVPSTFEPFKDGDFCLRV 503

  Fly  1379 FRTRSPAAPEIGRLV----------------EHSKRQVRGFVG---------------------- 1405
            |..:...|.|||..|                ||.:.....|||                      
  Rat   504 FSEKKAKALEIGDTVSGHPHEPHPRDMDEEDEHVRSLFEEFVGKDSEISANQLKRVLNEVLSKRT 568

  Fly  1406 -----------CHKM---LERD------------------IYLLVCLAFNHWHTGIEDPHQ 1434
                       |.:|   |:.|                  .||.:....:|.|.|..:.|:
  Rat   569 DMKFDGFNINTCREMISLLDSDGTGSLGPMEFKTLWLKIRTYLEIFQEMDHNHVGTIEAHE 629

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
solNP_476738.3 zf-RanBP 6..34 CDD:279035
RanBP2-type Zn finger 10..29 CDD:275376
zf-RanBP 135..164 CDD:279035
zf-RanBP 643..672 CDD:279035
RanBP2-type Zn finger 647..667 CDD:275375
zf-RanBP 704..731 CDD:279035
RanBP2-type Zn finger 708..727 CDD:275376
zf-RanBP 747..774 CDD:279035
RanBP2-type Zn finger 749..768 CDD:275376
zf-RanBP 927..954 CDD:279035
RanBP2-type Zn finger 931..950 CDD:275376
CysPc 1001..1328 CDD:128526 117/399 (29%)
Capn8NP_579843.2 Peptidase_C2 46..342 CDD:279042 108/318 (34%)
Domain III 355..512 23/159 (14%)
Calpain_III 356..509 CDD:279416 23/155 (15%)
Linker. /evidence=ECO:0000250 513..531 4/17 (24%)
Domain IV. /evidence=ECO:0000250 532..703 15/98 (15%)
EFh 580..635 CDD:238008 10/50 (20%)
PTZ00183 612..>692 CDD:185503 4/18 (22%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0045
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D704215at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

Return to query results.
Submit another query.