DRSC/TRiP Functional Genomics Resources

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Protein Alignment sol and capn3

DIOPT Version :9

Sequence 1:NP_476738.3 Gene:sol / 44014 FlyBaseID:FBgn0003464 Length:1594 Species:Drosophila melanogaster
Sequence 2:XP_002935381.2 Gene:capn3 / 100497532 XenbaseID:XB-GENE-5875739 Length:805 Species:Xenopus tropicalis


Alignment Length:660 Identity:162/660 - (24%)
Similarity:253/660 - (38%) Gaps:201/660 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   899 QQGQGVGSASVVSASGAGSGAGAVGASTSTKKWQCPACTYDNCAASVVCDICSSPRGLASAVLGE 963
            :|.|...|.|.|: .||..||...|                               |:.||::..
 Frog     8 EQAQKTESGSAVT-GGASDGAAPGG-------------------------------GIYSAIISR 40

  Fly   964 AL----GRKSVRVALTPADIRQESKLMENLRQLEETEALTKWQNIIQYCRDNSELFVDDSFPPAP 1024
            .|    ||:               |..|.||               :.|...:..|.|..|||..
 Frog    41 NLPIIGGRE---------------KTFEELR---------------KKCLQRNFHFQDREFPPDE 75

  Fly  1025 KSLYYNPASGAGEGNPV-VQWRRPHEINCDGGAYPPWAVFRTPLPSDICQGVLGNCWLLSALAVL 1088
            .||:|:      :..|: .:|:||.|| |:...:......||    |||||.||:||.|:|:|.|
 Frog    76 SSLFYS------QSFPIKFEWKRPPEI-CENPQFILGGANRT----DICQGDLGDCWFLAAIACL 129

  Fly  1089 AEREDLVKEVLVTKEICGQ---GAYQVRLCKDGKWTTVLVDDLLPCDKRGHLVYSQ-AKRKQLWV 1149
            ...|.::..|:...:....   |.:..:..:.|.|..|::||.|| .....||::: ::|.:.|.
 Frog   130 TLNEKVLFRVIPPDQNFTDNYAGIFHFQFWRYGDWVDVIIDDYLP-TYNNELVFTKSSQRNEFWS 193

  Fly  1150 PLIEKAVAKIHGCYEALVSGRAIEGLATLTGAPCESIPLQASSLPMPSEDELDKDLIWAQLLSSR 1214
            .|:|||.||:||.||||..|...|.:...||...|...|:.:  |....:.:.|......|:.  
 Frog   194 ALLEKAYAKLHGSYEALKGGNTTEAMEDFTGGVTEFYELKEA--PKDMYNIMKKAFERGSLIG-- 254

  Fly  1215 C-VRFLMGASCG---GGNMK--------------------------------VDEEEYQQKGLRP 1243
            | :....|:|||   ..||:                                |..|.....||..
 Frog   255 CSIDDKYGSSCGFAPPSNMEDAIMKMIESVGDTRPDTNGRGQPPKPVATLVPVQLETRMANGLVK 319

  Fly  1244 RHAYSVLDVKD--IQGH--RLLKLRNPWGHYSWRGDWSDDSSLWT--DDLRDALMPHGASE-GVF 1301
            .|||||..|::  ::|.  :|::||||||...|.|.|.|::..||  |......:.|...| |.|
 Frog   320 GHAYSVTGVEETKLKGKPIKLVRLRNPWGQVEWNGAWGDNAKEWTMVDKSEKTRLQHQVQEDGEF 384

  Fly  1302 WISFEDVLNYFDCIDICKVRSG---------W----NEVR-LQGTLQPLCSI-SC---------- 1341
            |:|::|.:..|...:||.:...         |    ||.| ::|     ||. .|          
 Frog   385 WMSYDDFMKNFTKAEICNLTPDALDSDSLQVWTVSVNEGRWVRG-----CSAGGCRNYPDTYWTN 444

  Fly  1342 --VLLTVLE----PTEAEFT---LFQEGQRNSEKSQRSQLDLCVVIFRTRSPAAPEIGR------ 1391
              ..|.:||    |.:.|..   :....|:|..|.:::..:|..:.|     |..|:.:      
 Frog   445 PQYRLKLLEEDDDPADNEVVCSFVVALMQKNRRKDRKAGANLFTIGF-----AIYEVPKEMHGNN 504

  Fly  1392 --------LVEHSKRQVRGFVGCHKMLER-----DIYLLVCLAFNHWHTGIEDPHQYPQCILAIH 1443
                    |...||.:.:.::...::.:|     ..|:::...:        :|||..:.||.:.
 Frog   505 QHLQKDFFLYNASKAKCKSYINMREVCQRFRLPPSEYVIIPSTY--------EPHQEGEFILRVF 561

  Fly  1444 SSKRLLVEQI 1453
            |.||.:.|::
 Frog   562 SEKRNISEEV 571

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
solNP_476738.3 zf-RanBP 6..34 CDD:279035
RanBP2-type Zn finger 10..29 CDD:275376
zf-RanBP 135..164 CDD:279035
zf-RanBP 643..672 CDD:279035
RanBP2-type Zn finger 647..667 CDD:275375
zf-RanBP 704..731 CDD:279035
RanBP2-type Zn finger 708..727 CDD:275376
zf-RanBP 747..774 CDD:279035
RanBP2-type Zn finger 749..768 CDD:275376
zf-RanBP 927..954 CDD:279035 0/26 (0%)
RanBP2-type Zn finger 931..950 CDD:275376 0/18 (0%)
CysPc 1001..1328 CDD:128526 111/387 (29%)
capn3XP_002935381.2 Peptidase_C2 66..402 CDD:279042 106/351 (30%)
Calpain_III 416..566 CDD:279416 32/167 (19%)
Calpain_u2 570..637 CDD:293254 0/2 (0%)
EFh 648..706 CDD:298682
EFh 681..735 CDD:238008
EFh 712..801 CDD:298682
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D704215at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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