DRSC/TRiP Functional Genomics Resources

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Protein Alignment sol and capn3b

DIOPT Version :9

Sequence 1:NP_476738.3 Gene:sol / 44014 FlyBaseID:FBgn0003464 Length:1594 Species:Drosophila melanogaster
Sequence 2:NP_001230250.1 Gene:capn3b / 100034405 ZFINID:ZDB-GENE-041001-149 Length:723 Species:Danio rerio


Alignment Length:570 Identity:141/570 - (24%)
Similarity:231/570 - (40%) Gaps:151/570 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   951 SSPRGLASAVLGEALGRKSVRVALTPADIRQESKLMENLRQLEETEALTKWQNIIQYCRDNSELF 1015
            ::|..:.||:|.                 |.|:  :::.|:|::.:.|..     :|.| ...||
Zfish    27 TAPGNIYSAILS-----------------RNEA--VKDARRLKDFQELRD-----KYVR-KKVLF 66

  Fly  1016 VDDSFPPAPKSLYYNPASGAGEGNPV-VQWRRPHEINCDGGAYPPWAVFRTPLPSDICQGVLGNC 1079
            .|..||....||:|:      |..|: ::|:||.|| |....:......||    |||||.||:|
Zfish    67 EDPLFPAQDSSLFYS------EKFPLKLEWKRPMEI-CKNPQFILGGANRT----DICQGDLGDC 120

  Fly  1080 WLLSALAVLAEREDLVKEVLVTKEICGQ---GAYQVRLCKDGKWTTVLVDDLLPCDKRGHLVYSQ 1141
            |||:|:|.|...:.::|.|:...:...:   |.:..:..:.|:|..|::||.||..| ..||:::
Zfish   121 WLLAAIACLTLNDVILKRVVPHDQSFTENYAGIFHFQFWRYGEWVDVVIDDRLPTYK-NKLVFTR 184

  Fly  1142 A-KRKQLWVPLIEKAVAKIHGCYEALVSGRAIEGLATLTG----------APCESIPLQASSLPM 1195
            : :..:.|..|:|||.||:||.||||..|.::|.:...||          ||.|...:...:|..
Zfish   185 SGQNNEFWSALMEKAYAKLHGSYEALKGGNSLEAMEDFTGGVTEFYEITEAPKELYNIMRKALKR 249

  Fly  1196 PSEDELDKDLIWAQLLSSRCVRFLMGASCGGGNMKVD------EEEYQQKGLRPRHAYSVL---- 1250
            .|                     |||.:       :|      :......||...|||||.    
Zfish   250 GS---------------------LMGCA-------IDTLVPTAQRTKTASGLVRGHAYSVTGVEQ 286

  Fly  1251 ----DVKDIQGHRLLKLRNPWG----HYSWRGDWSDDSSLWTDDLRDALMPHGASEGVFWISFED 1307
                |.||:. .||:::|:|||    ......||.:.:.  |:..:..|.|  ..:|.||:.||:
Zfish   287 GKRKDGKDLM-IRLVRVRDPWGVAPPPACKSNDWVELAK--TEQDKQRLQP--GEQGEFWMCFEE 346

  Fly  1308 VLNYFDCIDICKVRSG---------WNEVRLQGTLQPLCSI-SC------------VLLTVLEPT 1350
            ....|..::||.:...         ||....:|.....||. .|            ..|.:||..
Zfish   347 FQKNFTKLEICNLTPDTLEDDQMFKWNVTVHEGRWVKGCSAGGCRNFPDTYWTNPQFRLVLLEAD 411

  Fly  1351 EAEFT------LFQEGQRNSEKSQRSQLDLCVVIFRT----RSPAAPEIGR---LVEHSKRQVRG 1402
            ..|.|      |.|:|:|....|..:..::...|:..    :.....::.:   |...|..:.:.
Zfish   412 AKEKTCTVVVALMQKGRRVERCSGATLHNIGFAIYEVPKEMKGNQQQQLSKDFFLYNASTARSKS 476

  Fly  1403 FVGCHKMLER-----DIYLLVCLAFNHWHTGIEDPHQYPQCILAIHSSKR 1447
            :|...::.||     ..|:::...|        |||:..:.:|.:.|..|
Zfish   477 YVNIREVTERFCLKPGEYVIIPSTF--------DPHKESEFLLRVFSENR 518

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
solNP_476738.3 zf-RanBP 6..34 CDD:279035
RanBP2-type Zn finger 10..29 CDD:275376
zf-RanBP 135..164 CDD:279035
zf-RanBP 643..672 CDD:279035
RanBP2-type Zn finger 647..667 CDD:275375
zf-RanBP 704..731 CDD:279035
RanBP2-type Zn finger 708..727 CDD:275376
zf-RanBP 747..774 CDD:279035
RanBP2-type Zn finger 749..768 CDD:275376
zf-RanBP 927..954 CDD:279035 0/2 (0%)
RanBP2-type Zn finger 931..950 CDD:275376
CysPc 1001..1328 CDD:128526 104/368 (28%)
capn3bNP_001230250.1 Peptidase_C2 66..358 CDD:279042 98/336 (29%)
Calpain_III 372..519 CDD:279416 30/155 (19%)
EFh 555..623 CDD:298682
EFh 599..654 CDD:238008
EFh 630..719 CDD:298682
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0045
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D704215at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.820

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