DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sls and Sspo

DIOPT Version :9

Sequence 1:NP_001261304.1 Gene:sls / 44013 FlyBaseID:FBgn0086906 Length:18468 Species:Drosophila melanogaster
Sequence 2:NP_001007017.1 Gene:Sspo / 474348 RGDID:1549716 Length:5141 Species:Rattus norvegicus


Alignment Length:450 Identity:89/450 - (19%)
Similarity:144/450 - (32%) Gaps:163/450 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   290 HNGQRLVASQKYEISYSSGVATLRVKNATARDGGHYTLLAENLQGCVVSSAVLAVE--------- 345
            |:..|..|....|:.|:.|...|...:.    |.:::.||.:..|||..|..:.::         
  Rat   919 HHCPRQWALCPQELIYAPGACLLTCDSL----GANHSCLAGSTDGCVCPSGTVLLDKHCVSPDLC 979

  Fly   346 ---------PAAETAYEPKPVDVMAEQLEAGKALPPAFVKAFGDREITEGRMTRFDCRVTGNPYP 401
                     |...|..|...:.|...|                 |....|:.....|:.:|.|:.
  Rat   980 PCRHNGQWYPPNATIQEDCNICVCQNQ-----------------RWHCTGQRCSGWCQASGAPHY 1027

  Fly   402 EVF----WLINGRQVRDDASHKILVNESGSH-SLMITNVTRLDAGAVQCLARNKAGEVAIEAQLN 461
            ..|    :...|      |...:||.|:|.. |:.|.|   |..|| ..|...||..|.:::   
  Rat  1028 VTFDGLVFTFPG------ACEYLLVREAGGRFSVSIQN---LPCGA-SGLTCTKALAVRLDS--- 1079

  Fly   462 VLEKEQVVAPQFVQRFSTMTVREGEPITMSANAIGTPQ----PRITWQKDGVQISSTAERFVGI- 521
                            :.:.:..|:.:|::..:|..|:    |.::....|:.:..|..  :|: 
  Rat  1080 ----------------TVVHMLRGQAVTVNGVSIKLPKVYTGPGLSLHHAGLFLLLTTR--LGLT 1126

  Fly   522 ---DGGATCLEIPRVTANDAGWYQCTAQNIAGSTAN--RARLYVEVPREQPNYEQRRLNLPRPTK 581
               |||...|  .:::.:..|.......|..|..:|  |:|..|..|..:......|||...|  
  Rat  1127 LLWDGGTRVL--VQLSPHFHGRVTGLCGNFDGDVSNDLRSRQGVLEPTAELTAHSWRLNPLCP-- 1187

  Fly   582 VIEPEPIPGPEIIYLRHVERAKPH----LRPGEEDRVY-------PPPQF--------------- 620
              ||..:|.|..:....|..|:.|    |:|     ::       ||.|:               
  Rat  1188 --EPGDLPHPCSVNAHRVNWARAHCEVILQP-----IFAPCHTEVPPQQYYEWCVYDACGCDTGG 1245

  Fly   621 -----------------------------IIPLQNVQQTEGGRVHMEARIEPVGD---PT 648
                                         :.||    |.|||:|:     ||.|.   ||
  Rat  1246 DCECLCSAIATYADECARHRHHVRWRSQELCPL----QCEGGQVY-----EPCGSTCPPT 1296

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
slsNP_001261304.1 I-set 87..174 CDD:254352
Ig 109..175 CDD:143165
Ig 254..334 CDD:299845 10/43 (23%)
I-set 255..344 CDD:254352 14/53 (26%)
I-set 372..462 CDD:254352 22/94 (23%)
Ig 390..463 CDD:299845 20/77 (26%)
Ig 471..561 CDD:299845 18/99 (18%)
I-set 471..560 CDD:254352 18/98 (18%)
I-set 618..709 CDD:254352 12/77 (16%)
Ig 645..705 CDD:143165 2/6 (33%)
DUF1136 715..741 CDD:284093
IG_like 762..843 CDD:214653
Ig 779..835 CDD:143165
I-set 890..982 CDD:254352
Ig 918..979 CDD:143165
DUF1136 988..1014 CDD:284093
I-set 1024..1116 CDD:254352
Ig 1058..1113 CDD:143165
I-set 1158..1250 CDD:254352
Ig 1178..1246 CDD:143165
DUF1136 1256..1282 CDD:284093
I-set 1291..1380 CDD:254352
IGc2 1304..1372 CDD:197706
DUF1136 1388..1414 CDD:284093
I-set 1424..1515 CDD:254352
Ig 1442..1513 CDD:143165
DUF1136 1522..1548 CDD:284093
I-set 1558..1645 CDD:254352
IGc2 1571..1639 CDD:197706
DUF1136 1655..1679 CDD:284093
I-set 1691..1782 CDD:254352
IGc2 1718..1772 CDD:197706
DUF1136 1788..1814 CDD:284093
I-set 1824..1916 CDD:254352
IGc2 1838..1906 CDD:197706
DUF1136 1922..1948 CDD:284093
I-set 1958..2049 CDD:254352
Ig 1985..2044 CDD:143165
I-set 2089..2181 CDD:254352
IGc2 2103..2171 CDD:197706
DUF1136 2187..2213 CDD:284093
I-set 2222..2314 CDD:254352
IGc2 2236..2304 CDD:197706
DUF1136 2320..2346 CDD:284093
I-set 2356..2448 CDD:254352
Ig 2384..2445 CDD:143165
DUF1136 2454..2480 CDD:284093
I-set 2488..2580 CDD:254352
Ig 2516..2576 CDD:143165
I-set 2622..2714 CDD:254352
IGc2 2636..2704 CDD:197706
I-set 2754..2844 CDD:254352
Ig 2771..2840 CDD:143165
IGc2 2908..2974 CDD:197706
I-set 3029..3120 CDD:254352
Ig 3057..3116 CDD:143165
I-set 3130..3220 CDD:254352
Ig 3148..3219 CDD:143165
I-set 3263..3354 CDD:254352
I-set 3401..3493 CDD:254352
Ig 3429..3490 CDD:143165
I-set 3539..3630 CDD:254352
Ig 3556..3625 CDD:143165
I-set 3676..3767 CDD:254352
IGc2 3690..3758 CDD:197706
I-set 3811..3900 CDD:254352
Ig 3828..3899 CDD:143165
I-set 3954..4046 CDD:254352
Ig 3963..4042 CDD:299845
I-set 4092..4180 CDD:254352
Ig 4102..4172 CDD:299845
I-set 4394..4483 CDD:254352
Ig 4411..4480 CDD:143165
I-set 4497..4581 CDD:254352
Ig 4519..4580 CDD:143165
I-set 4604..4693 CDD:254352
Ig 4621..4691 CDD:299845
I-set 4702..4792 CDD:254352
Ig 4702..4791 CDD:299845
COG4372 4996..>5260 CDD:226809
I-set 6536..6622 CDD:254352
Ig 6554..6622 CDD:143165
Ig 6654..6725 CDD:143165
I-set 6743..6829 CDD:254352
Ig 6760..6829 CDD:299845
I-set 6841..6928 CDD:254352
Ig 6858..6927 CDD:143165
I-set 6942..7033 CDD:254352
IGc2 6957..7023 CDD:197706
I-set 7066..7157 CDD:254352
Ig 7084..7153 CDD:143165
IGc2 7224..7289 CDD:197706
Ehrlichia_rpt 14571..15030 CDD:118064
SH3_p47phox_like 16753..16807 CDD:212790
I-set 16841..16931 CDD:254352
Ig 16858..16931 CDD:299845
I-set 16965..17060 CDD:254352
IGc2 16978..17050 CDD:197706
I-set 17068..17152 CDD:254352
Ig_2 17078..17152 CDD:290606
IG_like 17170..17253 CDD:214653
Ig 17180..17250 CDD:143165
I-set 17260..17342 CDD:254352
IGc2 17274..17331 CDD:197706
I-set 17347..17432 CDD:254352
IGc2 17367..17423 CDD:197706
I-set 17437..17521 CDD:254352
Ig <17468..17521 CDD:299845
I-set 17528..17611 CDD:254352
Ig 17553..17602 CDD:143165
I-set 17618..17708 CDD:254352
Ig 17635..17708 CDD:299845
FN3 17712..17791 CDD:238020
I-set 17813..17898 CDD:254352
Ig 17830..17894 CDD:143165
Ig 17922..17994 CDD:299845
FN3 17998..18090 CDD:238020
FN3 18098..18189 CDD:238020
FN3 18207..18298 CDD:238020
FN3 18307..18398 CDD:238020
SspoNP_001007017.1 VWD 192..341 CDD:214566
C8 393..468 CDD:285899
TIL 472..527 CDD:280072
VWD 556..716 CDD:214566
C8 769..826 CDD:285899
TIL 830..883 CDD:280072
VWD 1019..1168 CDD:278521 38/181 (21%)
C8 1206..1276 CDD:285899 7/74 (9%)
TIL 1280..1336 CDD:280072 8/21 (38%)
LDLa 1381..1416 CDD:238060
LDLa 1421..1455 CDD:238060
LDLa 1457..1491 CDD:238060
LDLa 1497..1528 CDD:197566
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1533..1567
Ldl_recept_a 1568..1604 CDD:278486
TSP1 1702..1753 CDD:214559
TSP1 1758..1812 CDD:214559
TIL 1822..1873 CDD:280072
TSP1 1917..1970 CDD:214559
FA58C 2070..2226 CDD:214572
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2087..2109
FA58C <2111..2225 CDD:238014
LDLa 2236..2270 CDD:238060
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2262..2335
LDLa 2392..2426 CDD:238060
LDLa 2449..2483 CDD:238060
TSP1 2490..2538 CDD:214559
TSP1 2543..2595 CDD:214559
TIL 2618..2660 CDD:280072
TSP1 2703..2752 CDD:214559
TSP1 2760..2813 CDD:214559
TSP_1 2819..2867 CDD:278517
TIL 2871..2930 CDD:280072
VWC_out 2932..2979 CDD:214565
TSP1 2972..3023 CDD:214559
TIL 3075..3127 CDD:280072
TSP1 3240..3292 CDD:214559
TIL 3300..3350 CDD:280072
TSP1 3396..3439 CDD:214559
TSP1 3460..3504 CDD:214559
TIL 3514..3570 CDD:280072
TSP1 3633..3677 CDD:214559
TSP1 3810..3862 CDD:214559
TSP1 3879..3927 CDD:214559
TSP1 3945..3998 CDD:214559
TSP1 4003..4055 CDD:214559
TIL 4058..4113 CDD:280072
TSP1 4158..4208 CDD:214559
TSP1 4252..4303 CDD:214559
TSP1 4367..4418 CDD:214559
TIL 4422..4477 CDD:280072
TSP1 4611..4659 CDD:214559
TIL 4673..4719 CDD:280072
TSP1 4763..4812 CDD:214559
TIL 4814..4868 CDD:280072
TIL 4920..4978 CDD:280072
VWC 4980..5035 CDD:302663
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1216
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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