DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sls and Mag

DIOPT Version :9

Sequence 1:NP_001261304.1 Gene:sls / 44013 FlyBaseID:FBgn0086906 Length:18468 Species:Drosophila melanogaster
Sequence 2:NP_058886.1 Gene:Mag / 29409 RGDID:3035 Length:626 Species:Rattus norvegicus


Alignment Length:598 Identity:107/598 - (17%)
Similarity:192/598 - (32%) Gaps:195/598 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly  6793 TTTTIKVVNMTRKRTGKYEVWAKNKVGEAKSS-GSVVVSDQKPDEQIKPPRFIQPLEPKYFGEHE 6856
            ||..:..:.::..|.|.:..|..:.:...:.: .|:......|||          |.|       
  Rat     5 TTLPLFWIMISASRGGHWGAWMPSSISAFEGTCVSIPCRFDFPDE----------LRP------- 52

  Fly  6857 VAIIEAIVESEPLSSFQWFVHN------EPIKSSNEVRIVSQA-------------NKSTLLIEN 6902
             |::..:          |:.::      .|:...:..::|.::             ...|||:..
  Rat    53 -AVVHGV----------WYFNSPYPKNYPPVVFKSRTQVVHESFQGRSRLLGDLGLRNCTLLLST 106

  Fly  6903 FQSKFVGPFTCRAENVGG----SVTSTATVNLIPQEEAEEFESPRFVEELVQPVEVMDGEALLLT 6963
            ...:..|.:..|.: :||    :.:..:.:::|        .:|    .:|.|.||:.|..:.::
  Rat   107 LSPELGGKYYFRGD-LGGYNQYTFSEHSVLDII--------NTP----NIVVPPEVVAGTEVEVS 158

  Fly  6964 CQVTG---KPTPKVEWYHNAEKITENKETTISQDLQGVCQLQITEVFPENEGQYECVATNKIGKS 7025
            |.|..   :..|::.|..:                :|:.:..:.....|:||             
  Rat   159 CMVPDNCPELRPELSWLGH----------------EGLGEPTVLGRLREDEG------------- 194

  Fly  7026 VSKTNVKIQAFEYIPDSEITG-LTGSEEDLLDRTL------SIDEQAPKIIKKLPEKIEPKEGEQ 7083
               |.|::....::|..|..| ..|.:....:.||      |:|.:.|.:|.::...:|..||..
  Rat   195 ---TWVQVSLLHFVPTREANGHRLGCQAAFPNTTLQFEGYASLDVKYPPVIVEMNSSVEAIEGSH 256

  Fly  7084 AKLEVKVVGKPKPKVKWLRDD--------EQIFASEEYQIENFEDGTSVLVINHVYPDDLGTISF 7140
            ..|.......|.|.:.|:||.        |.::...| ::...|||....:..:.|..|..|:..
  Rat   257 VSLLCGADSNPPPLLTWMRDGMVLREAVAESLYLDLE-EVTPAEDGIYACLAENAYGQDNRTVEL 320

  Fly  7141 EA-YNPLGVAVTTALFAVEVKFFFRCLELHYLCFPNSLESSIVGSKDYRKPEWVSQMEEMQVALK 7204
            .. |.|....|...:.|||                                              
  Rat   321 SVMYAPWKPTVNGTVVAVE---------------------------------------------- 339

  Fly  7205 AAKCSPSLLNEMRDCRAALGETAKFSIQFAGNPIPDIQWYFNNVQLRASEKYRMVVQEQEATLEI 7269
                               |||.........||.| |...|...|:.|:     |:.|.:..||:
  Rat   340 -------------------GETVSILCSTQSNPDP-ILTIFKEKQILAT-----VIYESQLQLEL 379

  Fly  7270 MKITSEDCGYYNCKLINEIGMTMTRAKFDISSTSTIVEET---KAKTTVK----KKSGKKTMVKR 7327
            ..:|.||.|.|.|...|:.|...|.....:.....|:.|:   .|:.||:    .||..:..|..
  Rat   380 PAVTPEDDGEYWCVAENQYGQRATAFNLSVEFAPIILLESHCAAARDTVQCLCVVKSNPEPSVAF 444

  Fly  7328 SGASESQNVQKTE 7340
            ...|.:..|.:||
  Rat   445 ELPSRNVTVNETE 457

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
slsNP_001261304.1 I-set 87..174 CDD:254352
Ig 109..175 CDD:143165
Ig 254..334 CDD:299845
I-set 255..344 CDD:254352
I-set 372..462 CDD:254352
Ig 390..463 CDD:299845
Ig 471..561 CDD:299845
I-set 471..560 CDD:254352
I-set 618..709 CDD:254352
Ig 645..705 CDD:143165
DUF1136 715..741 CDD:284093
IG_like 762..843 CDD:214653
Ig 779..835 CDD:143165
I-set 890..982 CDD:254352
Ig 918..979 CDD:143165
DUF1136 988..1014 CDD:284093
I-set 1024..1116 CDD:254352
Ig 1058..1113 CDD:143165
I-set 1158..1250 CDD:254352
Ig 1178..1246 CDD:143165
DUF1136 1256..1282 CDD:284093
I-set 1291..1380 CDD:254352
IGc2 1304..1372 CDD:197706
DUF1136 1388..1414 CDD:284093
I-set 1424..1515 CDD:254352
Ig 1442..1513 CDD:143165
DUF1136 1522..1548 CDD:284093
I-set 1558..1645 CDD:254352
IGc2 1571..1639 CDD:197706
DUF1136 1655..1679 CDD:284093
I-set 1691..1782 CDD:254352
IGc2 1718..1772 CDD:197706
DUF1136 1788..1814 CDD:284093
I-set 1824..1916 CDD:254352
IGc2 1838..1906 CDD:197706
DUF1136 1922..1948 CDD:284093
I-set 1958..2049 CDD:254352
Ig 1985..2044 CDD:143165
I-set 2089..2181 CDD:254352
IGc2 2103..2171 CDD:197706
DUF1136 2187..2213 CDD:284093
I-set 2222..2314 CDD:254352
IGc2 2236..2304 CDD:197706
DUF1136 2320..2346 CDD:284093
I-set 2356..2448 CDD:254352
Ig 2384..2445 CDD:143165
DUF1136 2454..2480 CDD:284093
I-set 2488..2580 CDD:254352
Ig 2516..2576 CDD:143165
I-set 2622..2714 CDD:254352
IGc2 2636..2704 CDD:197706
I-set 2754..2844 CDD:254352
Ig 2771..2840 CDD:143165
IGc2 2908..2974 CDD:197706
I-set 3029..3120 CDD:254352
Ig 3057..3116 CDD:143165
I-set 3130..3220 CDD:254352
Ig 3148..3219 CDD:143165
I-set 3263..3354 CDD:254352
I-set 3401..3493 CDD:254352
Ig 3429..3490 CDD:143165
I-set 3539..3630 CDD:254352
Ig 3556..3625 CDD:143165
I-set 3676..3767 CDD:254352
IGc2 3690..3758 CDD:197706
I-set 3811..3900 CDD:254352
Ig 3828..3899 CDD:143165
I-set 3954..4046 CDD:254352
Ig 3963..4042 CDD:299845
I-set 4092..4180 CDD:254352
Ig 4102..4172 CDD:299845
I-set 4394..4483 CDD:254352
Ig 4411..4480 CDD:143165
I-set 4497..4581 CDD:254352
Ig 4519..4580 CDD:143165
I-set 4604..4693 CDD:254352
Ig 4621..4691 CDD:299845
I-set 4702..4792 CDD:254352
Ig 4702..4791 CDD:299845
COG4372 4996..>5260 CDD:226809
I-set 6536..6622 CDD:254352
Ig 6554..6622 CDD:143165
Ig 6654..6725 CDD:143165
I-set 6743..6829 CDD:254352 6/36 (17%)
Ig 6760..6829 CDD:299845 6/36 (17%)
I-set 6841..6928 CDD:254352 13/109 (12%)
Ig 6858..6927 CDD:143165 11/91 (12%)
I-set 6942..7033 CDD:254352 16/93 (17%)
IGc2 6957..7023 CDD:197706 9/68 (13%)
I-set 7066..7157 CDD:254352 22/99 (22%)
Ig 7084..7153 CDD:143165 17/77 (22%)
IGc2 7224..7289 CDD:197706 21/64 (33%)
Ehrlichia_rpt 14571..15030 CDD:118064
SH3_p47phox_like 16753..16807 CDD:212790
I-set 16841..16931 CDD:254352
Ig 16858..16931 CDD:299845
I-set 16965..17060 CDD:254352
IGc2 16978..17050 CDD:197706
I-set 17068..17152 CDD:254352
Ig_2 17078..17152 CDD:290606
IG_like 17170..17253 CDD:214653
Ig 17180..17250 CDD:143165
I-set 17260..17342 CDD:254352
IGc2 17274..17331 CDD:197706
I-set 17347..17432 CDD:254352
IGc2 17367..17423 CDD:197706
I-set 17437..17521 CDD:254352
Ig <17468..17521 CDD:299845
I-set 17528..17611 CDD:254352
Ig 17553..17602 CDD:143165
I-set 17618..17708 CDD:254352
Ig 17635..17708 CDD:299845
FN3 17712..17791 CDD:238020
I-set 17813..17898 CDD:254352
Ig 17830..17894 CDD:143165
Ig 17922..17994 CDD:299845
FN3 17998..18090 CDD:238020
FN3 18098..18189 CDD:238020
FN3 18207..18298 CDD:238020
FN3 18307..18398 CDD:238020
MagNP_058886.1 Interaction with RTN4R and RTN4RL2. /evidence=ECO:0000269|PubMed:19420245 20..325 63/378 (17%)
IgV_CD33 22..138 CDD:409377 18/144 (13%)
Ig strand B 38..42 CDD:409377 1/3 (33%)
Ig strand C 56..60 CDD:409377 0/13 (0%)
Ganglioside GT1b binding. /evidence=ECO:0000250|UniProtKB:P20917 65..67 0/1 (0%)
Ig strand E 100..104 CDD:409377 2/3 (67%)
Ig strand F 114..119 CDD:409377 0/4 (0%)
Ganglioside GT1b binding. /evidence=ECO:0000250|UniProtKB:P20917 124..128 0/3 (0%)
Ig strand G 128..133 CDD:409377 0/4 (0%)
IgC2_CD33_d2_like 141..235 CDD:409579 23/129 (18%)
Ig strand B 155..159 CDD:409579 0/3 (0%)
Ig strand C 171..175 CDD:409579 0/3 (0%)
Ig strand E 200..204 CDD:409579 0/3 (0%)
Ig strand F 214..219 CDD:409579 1/4 (25%)
Ig strand G 229..232 CDD:409579 0/2 (0%)
Ig_3 239..309 CDD:404760 16/70 (23%)
Ig strand A 239..242 CDD:409353 1/2 (50%)
Ig strand A' 248..251 CDD:409353 0/2 (0%)
Ig strand B 256..264 CDD:409353 1/7 (14%)
Ig strand C 270..274 CDD:409353 0/3 (0%)
Ig strand C' 277..280 CDD:409353 0/2 (0%)
Ig strand E 289..293 CDD:409353 0/3 (0%)
Ig strand F 301..309 CDD:409353 1/7 (14%)
Ig strand G 312..322 CDD:409353 2/9 (22%)
IG 333..409 CDD:214652 26/146 (18%)
Required for normal axon myelination in the central nervous system. /evidence=ECO:0000250|UniProtKB:P20917 577..626
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 581..608
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4475
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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