DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pgm1 and Pgm2l1

DIOPT Version :9

Sequence 1:NP_524675.1 Gene:Pgm1 / 44010 FlyBaseID:FBgn0003076 Length:560 Species:Drosophila melanogaster
Sequence 2:NP_001102924.1 Gene:Pgm2l1 / 685076 RGDID:1583226 Length:621 Species:Rattus norvegicus


Alignment Length:627 Identity:135/627 - (21%)
Similarity:217/627 - (34%) Gaps:190/627 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 GTSGLRKK-------VKVFTQPNYTENFVQAILEANGAALAGSTLVVGGD--GRFYCKEAAELIV 74
            ||:|||..       :...|....|:...: .||...:.......|||.|  |:.....:::.:.
  Rat    68 GTAGLRSAMGAGFCYINDLTVIQSTQGMYK-YLERCFSDFKQRGFVVGYDTRGQVTSSCSSQRLA 131

  Fly    75 RLSAANGVSKLLVGQ-------NGILSTPAVSSLIRHNKALGGIVLTASHNPGGPENDFGIKFNC 132
            :|:||     :|:.:       :..:.||.|...::..||:.|:::|||||   .:.|.|.|...
  Rat   132 KLTAA-----VLLAKDVPVYLFSRYVPTPFVPYAVQELKAVAGVMITASHN---RKEDNGYKVYW 188

  Fly   133 ENGGPAPDAFTNHIYKITTEIKE---YKLVRNLQIDISKVGVTSFDIAGKPFTVEVIDSVANYVR 194
            |.|..........|.|...|..|   .....|| :|.|            |...:.:..:..  |
  Rat   189 ETGAQITSPHDKEILKCIEECVEPWDDSWNDNL-VDTS------------PLKKDPLQDICR--R 238

  Fly   195 HMEEIFDFAKLKDFVSGKATGKPLKMRIDAMNGVTGSYVREIFLNRLGATESSVVHTTPLPDFGG 259
            :||::......:| ::.|.|   ||....:.:||...||:..|        .......|:|....
  Rat   239 YMEDLKKICFYRD-LNSKTT---LKFVHTSFHGVGHDYVQLAF--------QVFGFKPPIPVPEQ 291

  Fly   260 LHPDPNLTYAK-----------DLVDTVAQGD-YDIGAAFDGDGDR------------NMIIGSK 300
            ..|||:.:..|           :|...:|:.: ..|..|.|.|.||            .:..|::
  Rat   292 KDPDPDFSTVKCPNPEEGESVLELSLRLAEKENARIVLATDPDADRLAVAELQENGHWKVFTGNE 356

  Fly   301 --AFF-------------------------VTPSDSLAVIA-----HYLEAIPYFQKNGVQGFAR 333
              |.|                         ...|..|..||     |:.|.:|.|:..|      
  Rat   357 LAALFGWWMFDCWKKSKPNADVKNVYMLATTVSSKILKAIALKEGFHFEETLPGFKWIG------ 415

  Fly   334 SMPTASAVDLVGRKLGKEV---FEVPTGWKYFGNLMDAGRLCLCGEESFGTGSNHIREKDGIWA- 394
                :...||:|.  ||||   ||...|:             |||        ..:.:|||:.| 
  Rat   416 ----SRIKDLLGH--GKEVLFAFEESIGF-------------LCG--------TSVLDKDGVSAA 453

  Fly   395 -VLAWISVMQHTGKG--IEDILKQHWSVYGRNYFTRYDYEECASDP----CNEMVATMEKTITAP 452
             |:|.::......|.  :|.::|. :..|| .:.::..|..|...|    ..|.:...|.....|
  Rat   454 VVVAEMAAFLDARKVTLMEQLMKV-YETYG-YHMSKTSYFLCYDPPTIKTIFERIRNFESPKEYP 516

  Fly   453 EFVG-------KSYSSGGKTYKVKEADNFSYTDPVDKSV----ATKQGLRIVFEDGSRIVVRLSG 506
            :|.|       :..::|           :..:.|..|||    ...|.:...|::|....:|.||
  Rat   517 KFCGAFAILHVRDITTG-----------YDSSQPNKKSVLPVSKNSQMITFTFQNGCVATLRTSG 570

  Fly   507 TGSSGATVRLYIDSYEKENVLGQASVM-----LKPLIDIALE 543
            |...   ::.|.:.....   ||:...     ||.|||..:|
  Rat   571 TEPK---IKYYAEMCASP---GQSDTALLEEELKKLIDALIE 606

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pgm1NP_524675.1 PLN02307 1..560 CDD:177942 135/627 (22%)
PGM1 6..560 CDD:100087 135/627 (22%)
Pgm2l1NP_001102924.1 PTZ00150 24..620 CDD:240294 135/627 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166335272
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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