DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pgm1 and pgm1

DIOPT Version :9

Sequence 1:NP_524675.1 Gene:Pgm1 / 44010 FlyBaseID:FBgn0003076 Length:560 Species:Drosophila melanogaster
Sequence 2:XP_012816250.1 Gene:pgm1 / 407960 XenbaseID:XB-GENE-948527 Length:566 Species:Xenopus tropicalis


Alignment Length:564 Identity:325/564 - (57%)
Similarity:423/564 - (75%) Gaps:12/564 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 LTVEIVATKPYEGQKPGTSGLRKKVKVF-TQPNYTENFVQAIL-EANGAALAGSTLVVGGDGRFY 65
            ||::   |.||..|||||||||||...| |:.||.:||:|:|| ..:.....|||:|||||||::
 Frog     9 LTLQ---TAPYYDQKPGTSGLRKKTCCFETKANYLQNFIQSILFSIDLRDRQGSTMVVGGDGRYF 70

  Fly    66 CKEAAELIVRLSAANGVSKLLVGQNGILSTPAVSSLIRHNKALGGIVLTASHNPGGPENDFGIKF 130
            .|.|.|:||:::||||:.:|::||||||||||||.:||..||:|||:||||||||||..||||||
 Frog    71 NKSAIEIIVQMAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTASHNPGGPNGDFGIKF 135

  Fly   131 NCENGGPAPDAFTNHIYKITTEIKEYKLVRNLQIDISKVGVTSFDIAG--KPFTVEVIDSVANYV 193
            |..||||||:|.|:.|::::..|:||.:..:|::|::.:|...||:..  ||||||::|||..|.
 Frog   136 NTSNGGPAPEAITDKIFQLSKTIEEYAICPDLKVDLTTIGKQQFDLENKFKPFTVEIVDSVEAYA 200

  Fly   194 RHMEEIFDFAKLKDFVSGKATGKPLKMRIDAMNGVTGSYVREIFLNRLGATESSVVHTTPLPDFG 258
            ..:..||||:.||:.:||:   ..||:|||||:||.|.||::|....|||..:|.|:..||.|||
 Frog   201 NMLRNIFDFSALKELLSGQ---NRLKIRIDAMHGVVGPYVKKILCEELGAPANSAVNCIPLEDFG 262

  Fly   259 GLHPDPNLTYAKDLVDTVAQGDYDIGAAFDGDGDRNMIIGSKAFFVTPSDSLAVIAHYLEAIPYF 323
            |.|||||||||.:||||:..|::|.|||||||||||||:|...|||.||||:||||..:.:||||
 Frog   263 GHHPDPNLTYASELVDTMKTGEHDFGAAFDGDGDRNMILGKNGFFVNPSDSVAVIAANIFSIPYF 327

  Fly   324 QKNGVQGFARSMPTASAVDLVGRKLGKEVFEVPTGWKYFGNLMDAGRLCLCGEESFGTGSNHIRE 388
            |..||:||||||||:.|:|.|.:.....::|.|||||:|||||||.:|.|||||||||||:||||
 Frog   328 QHTGVRGFARSMPTSGALDRVAKATKIALYETPTGWKFFGNLMDANKLSLCGEESFGTGSDHIRE 392

  Fly   389 KDGIWAVLAWISVMQHTGKGIEDILKQHWSVYGRNYFTRYDYEECASDPCNEMVATMEKTITAPE 453
            |||:||||||:|::....:.:|:|||.||..||||:||||||||..|:..|:|:..:|..:....
 Frog   393 KDGLWAVLAWLSIIATRKQSVEEILKDHWQKYGRNFFTRYDYEEVDSEGANKMMKDLETLMFDRA 457

  Fly   454 FVGKSYSSGGKTYKVKEADNFSYTDPVDKSVATKQGLRIVFEDGSRIVVRLSGTGSSGATVRLYI 518
            |:|:..|.|.|.|.|::||||.|:||||.|::..||||::|.||||::.|||||||:|||:||||
 Frog   458 FIGQQLSVGDKVYTVEKADNFEYSDPVDGSISRNQGLRLIFADGSRVIFRLSGTGSAGATIRLYI 522

  Fly   519 DSYEK--ENVLGQASVMLKPLIDIALEISQLPKFTGRNAPTVIT 560
            |||||  :.:.....|||.|||.|||:||:|.:.|||:||||||
 Frog   523 DSYEKDLQKIYEDPQVMLGPLITIALKISKLQERTGRSAPTVIT 566

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pgm1NP_524675.1 PLN02307 1..560 CDD:177942 323/562 (57%)
PGM1 6..560 CDD:100087 321/559 (57%)
pgm1XP_012816250.1 PGM1 10..566 CDD:100087 322/561 (57%)
PLN02307 13..566 CDD:177942 321/555 (58%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H1979
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D175278at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R914
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.040

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