DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pgm1 and pgm2

DIOPT Version :9

Sequence 1:NP_524675.1 Gene:Pgm1 / 44010 FlyBaseID:FBgn0003076 Length:560 Species:Drosophila melanogaster
Sequence 2:NP_998051.1 Gene:pgm2 / 405822 ZFINID:ZDB-GENE-040426-2218 Length:611 Species:Danio rerio


Alignment Length:623 Identity:139/623 - (22%)
Similarity:223/623 - (35%) Gaps:162/623 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 GTSGLRKK-------VKVFTQPNYTENFVQAILEANGAALAGSTLVVGGDG-----------RFY 65
            ||:|||..       :...|....|:.|. |.||.....|....:|:|.|.           ||.
Zfish    56 GTAGLRAAMGPGVSCMNDLTIIQTTQGFC-AYLEECFVDLKQRGVVIGFDARAHPPSGGSSKRFA 119

  Fly    66 CKEAAELIVRLSAANGVSKLLVGQNGILSTPAVSSLIRHNKALGGIVLTASHNPGGPENDFGIKF 130
            |..|..|:.|     ||...|.  :.|..||.|...:.|.....||::|||||   |:.|.|.|.
Zfish   120 CLAACVLMSR-----GVPVHLF--SDITPTPYVPFAVSHLGLCAGIMVTASHN---PKQDNGYKV 174

  Fly   131 NCENGG-------------------PAPDAFTNHIYKITTEIKEYKLVRNLQIDISKVGVTSFDI 176
            ...||.                   |.|:::.      |.|.....|:.:...||.:        
Zfish   175 YWANGAQIIPPHDKGIAAAIEQNLEPWPESWD------TDEGLRSSLLNDPYQDIHR-------- 225

  Fly   177 AGKPFTVEVIDSVANYVRHMEEIFDFAKLKDFVSGKATGKPLKMRIDAMNGVTGSYVREIF---- 237
                   |...::..:..|.|...:.|              :|:...:::||...:|:..|    
Zfish   226 -------EYCQTIQQHCFHRELNRNTA--------------VKIVHTSVHGVGHIFVQAAFKAFD 269

  Fly   238 LNRLGATESSVVHTTPLPDFGGL-HPDPN-----LTYAKDLVDTVAQGDYDIGAAFDGDGDRNMI 296
            |....|.|.   ...|.|:|..: :|:|.     ||.:..|.|   :....:..|.|.|.|| :.
Zfish   270 LQPPYAVEE---QKDPDPEFPTVKYPNPEEGEGVLTLSFALAD---KEGASVILANDPDADR-LA 327

  Fly   297 IGSK----AFFVTPSDSL-AVIAHYLEAIPYFQKNGVQG--------FARSMPTASAVDLVGRKL 348
            |..|    .:.|...:.| |::..::  ...:::..|:|        ...|..::..:..:..|.
Zfish   328 IAEKQESGKWRVFSGNELGALLGWWI--FQCWKQQKVEGKGSIKDVYMLSSTVSSKILRAIAVKE 390

  Fly   349 GKEVFEVPTGWKYFGN----LMDAGRLCLCG-EESFG-TGSNHIREKDGIWAVL---AWISVMQH 404
            |....|..||:|:.||    |||.|:..|.. ||:.| ..|..:.:|||:.|..   .:||.:..
Zfish   391 GFHFEETLTGFKWMGNRARELMDQGKTVLFAFEEAIGYMCSPAVLDKDGVSAAAIAGEFISYLAS 455

  Fly   405 TGKGIEDILKQHWSVYGRNYFTRYDYEECASDPCNEMVATMEKTITAPEFVG--KSYSSGGKTYK 467
            ....:...|:..:..|| .:.|:..|..|.:..      |::|........|  .||.       
Zfish   456 KNITLSHQLRSIYEEYG-YHITKNSYFICHNQD------TIKKLFERLRNYGVDNSYP------- 506

  Fly   468 VKEADNFSYT------------DPVDKSV----ATKQGLRIVFEDGSRIVVRLSGTGSSGATVRL 516
             ||...|:.:            .|.:|:|    .:.|.:...|.:|....:|.|||...   ::.
Zfish   507 -KECGGFAISAVRDLTTGYDSNQPNNKAVLPTSKSSQMITFSFANGGVATMRTSGTEPK---IKY 567

  Fly   517 YID--SYEKENVLGQASVMLKPLIDIALEISQLPKFTG 552
            |.:  :....:.|.|.:..|..|:|..:|....|:..|
Zfish   568 YTELCAAPGNSDLNQLTKELDNLVDAIVEHFYQPEKNG 605

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pgm1NP_524675.1 PLN02307 1..560 CDD:177942 139/623 (22%)
PGM1 6..560 CDD:100087 139/623 (22%)
pgm2NP_998051.1 PTZ00150 10..611 CDD:240294 139/623 (22%)
PGM2 52..592 CDD:100092 135/608 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170574556
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.840

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