DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pgm1 and nst

DIOPT Version :9

Sequence 1:NP_524675.1 Gene:Pgm1 / 44010 FlyBaseID:FBgn0003076 Length:560 Species:Drosophila melanogaster
Sequence 2:NP_648588.1 Gene:nst / 39434 FlyBaseID:FBgn0036298 Length:549 Species:Drosophila melanogaster


Alignment Length:536 Identity:109/536 - (20%)
Similarity:199/536 - (37%) Gaps:138/536 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 GILSTPAVSSLIRHNKALGGIVLTASHNPGGPENDFGIKFNCENG---GPAPDAFTNHIYKITTE 152
            |:|:|  :.|..|....: |:::|||||   ||.|.|:|.....|   ..:.:|....:..::.:
  Fly    46 GVLAT--LRSRYRGGSVI-GVMITASHN---PEPDNGVKLVDPKGEMLEASWEAIATDLVNVSDQ 104

  Fly   153 IKEY---KLVRNLQIDISKVGVTSFDIAGKPFTVEVIDSVANYV----RHMEE--IFDFAKLKDF 208
            ..|.   |::::..||::........:..:..:..::.:||:.|    .:::|  |.....|..|
  Fly   105 ELEQQVAKIIKDNNIDVTTSSQVFVGMDNRYHSPRLLKAVADGVIALKGNVKEYGIVTTPMLHYF 169

  Fly   209 V----SGKATGKPLK---------------------------MRIDAMNGVTGSYVREIFLNRLG 242
            |    :.:|.|||.:                           :..|..||| |:.....|:.|:.
  Fly   170 VVAANTKEAYGKPTEEGYYDKLIKAFELLRNGRLENGNYRNSIIYDGANGV-GARKMLQFIKRMK 233

  Fly   243 ATESSVVHTTPLPDFGGLHPDPNLTYAKDLVDTVAQG----------DYDIGAAFDGDGDRNMII 297
            .|.:..|....: ..|.::.|....|.|     |.|.          .|....:.|||.||.:..
  Fly   234 GTLNVTVINQGI-GVGKINEDCGADYVK-----VQQSPPKSMPEDVKPYTRCVSVDGDADRVVYF 292

  Fly   298 ---GSKAFFVTPSDSLA-VIAHYL-EAIPYFQKNGVQGFAR-SMPTASAVDLVGRKLGKEVFEVP 356
               ....|.:...|.:| :||.|| |.:...:.:...|..: :....::.|.:..:|...|..||
  Fly   293 FTDDKGEFHLLDGDRIATLIAGYLMELVTQSEISLRLGLVQTAYANGASTDYIVDQLKFPVSCVP 357

  Fly   357 TGWKY---------FGNLMDA---GRLCLCGEESFGTGSNHIREKDGIWAVLAWISVMQHT-GKG 408
            ||.|:         .|...:|   |.: :..:.:..|.:...:.|:....:|..|.::..| |..
  Fly   358 TGVKHLHHKALEYDIGVYFEANGHGTI-VFSDNAKATIAQVAQTKESAKTLLLLIDLINETVGDA 421

  Fly   409 IEDIL-------KQHWSVYGRNYFTRYDYEECASDPCNEMVATMEKTITAPEFVGKSYSSGGKTY 466
            |.|:|       .:.|.|  :::.:.|          |::                    ..:..
  Fly   422 ISDMLLVETILNHKGWDV--QDWISSY----------NDL--------------------PNRQL 454

  Fly   467 KVKEAD-NFSYTDPVDKSVATKQGLR------IVFEDGSRIVVRLSGTGSSGATVRLYIDSYEKE 524
            |||..| |...|...::.....:||:      :......|..||.|||..   .||:|.::..||
  Fly   455 KVKVQDRNVIETTDAERVCVKPEGLQTEINQVVAKYKRGRSFVRPSGTED---VVRVYAEAATKE 516

  Fly   525 ---NVLGQASVMLKPL 537
               |:..:..::::.|
  Fly   517 DTDNLAYEVGLLVQKL 532

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pgm1NP_524675.1 PLN02307 1..560 CDD:177942 109/536 (20%)
PGM1 6..560 CDD:100087 109/536 (20%)
nstNP_648588.1 PLN02895 6..539 CDD:215485 109/536 (20%)
PGM3 25..529 CDD:100088 108/531 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45439082
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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