DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pgm1 and Pgm2b

DIOPT Version :9

Sequence 1:NP_524675.1 Gene:Pgm1 / 44010 FlyBaseID:FBgn0003076 Length:560 Species:Drosophila melanogaster
Sequence 2:NP_610992.2 Gene:Pgm2b / 36649 FlyBaseID:FBgn0033969 Length:628 Species:Drosophila melanogaster


Alignment Length:486 Identity:112/486 - (23%)
Similarity:179/486 - (36%) Gaps:135/486 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 LVVGGDGRFYCKEAAELIVRLSAANGVSKLLVGQNGILSTPAVSSLIRHNKALGGIVLTASHNPG 120
            :|||.|||:..|..|:||..:...|.....|..:  ::.||.:...:...:.|.|||:|||||  
  Fly   117 VVVGYDGRYNSKRFAQLIATVFLNNDFKVFLFTR--MIPTPFIPFTVVTLQCLAGIVVTASHN-- 177

  Fly   121 GPENDFGIKFNCENGGPAPDAFTNHIYKITTEIKEYKLVRNLQIDISKVGVTSFDIAGKPFTVE- 184
             .:.|.|||....||..|.......|:       :| ::.||:              .||.:.| 
  Fly   178 -VKEDNGIKVYWSNGAQAMAPHDQRIH-------DY-MMNNLE--------------PKPSSWET 219

  Fly   185 --VIDS--VANYVRHMEEIFDFAKLKDFVSG--KATGKPLKMRI--DAMNGVTGSYVREIFLN-R 240
              |:|.  |.:..|.:..:| :..||..:..  ..|.:..::|.  .|::||...::||.|.. |
  Fly   220 SLVLDHPLVEDPYRQIYPLF-YEALKTLIPPIYLETNECSQLRFIYTALHGVGYPFMREAFYQAR 283

  Fly   241 LGATESSVVHTTPLPDFGGL-HPDP-------------------NLTYAKDL-VDTVAQGDYDIG 284
            |......|......|:|..| .|:|                   .|..|.|. ||.:|..:.|..
  Fly   284 LKPVIPVVEQKEADPEFPTLVKPNPEEGKEALKLAIKKADAEHCTLVLANDPDVDRLAVAELDPR 348

  Fly   285 A---AFDGDGDRNMIIGSKAF----FVTPSDSLA---VIAHYLEAIPYFQKNGVQG--FARSMPT 337
            .   .|:|: :...::|..|.    ..||..::.   :||..:.:........|:|  |...||:
  Fly   349 GRWKLFNGN-ELGALLGWWALENYKTRTPKPAVTNCIMIATLVSSRILAAMARVEGFIFVEGMPS 412

  Fly   338 -----ASAVDLVGRKLGKEV---FEVPTGWKYFGNLMDAGRLCLCGEESFGTGSNHIREKDGIWA 394
                 ..|::|  .|.|:.|   ||...|:.:..:|.|                     ||||.|
  Fly   413 FPWMAHRALEL--EKSGRTVLFAFEECFGYMFGMSLPD---------------------KDGIGA 454

  Fly   395 V--LAWISVMQHTGKGIEDI--LKQHWSVYG------------------------RNYFTRYDYE 431
            .  ||.::....:.:.:..|  |::.:..||                        ||:.....|.
  Fly   455 AMQLASMACYLRSTRNVTLIEKLREIYDTYGYHSSISSVYMADSPETITSVFDHLRNFTDEEGYP 519

  Fly   432 ECASDPCNEMVATMEKTITAPEFVGKSYSSG 462
            :...|...|:|...:.||.    :..|:|.|
  Fly   520 KFILDEEFEVVHIRDLTIG----LDTSFSDG 546

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pgm1NP_524675.1 PLN02307 1..560 CDD:177942 112/486 (23%)
PGM1 6..560 CDD:100087 112/486 (23%)
Pgm2bNP_610992.2 PTZ00150 26..621 CDD:240294 112/486 (23%)
PGM2 67..607 CDD:100092 112/486 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45439081
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.