DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pgm1 and prtfdc1b

DIOPT Version :10

Sequence 1:NP_524675.1 Gene:Pgm1 / 44010 FlyBaseID:FBgn0003076 Length:560 Species:Drosophila melanogaster
Sequence 2:NP_955812.2 Gene:prtfdc1b / 30765 ZFINID:ZDB-GENE-980526-324 Length:225 Species:Danio rerio


Alignment Length:144 Identity:29/144 - (20%)
Similarity:48/144 - (33%) Gaps:52/144 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   157 KLVRNLQIDISKVGVTSFDI--AGKPFTVEVIDSV----ANYVRHMEEIFDFAKLKDF------- 208
            :|.||:..|:....:....:  .|..|..:::|.:    .|..:.:....||.:||.:       
Zfish    55 RLARNIMDDLGDHDIVVLCVLKGGYQFCADLVDCIKVLCCNSNKTLPMRVDFIRLKSYLNDQSTE 119

  Fly   209 ------------VSGK---------ATGKPLKMRID-------AMNGVTGSYVREIFLNRLGATE 245
                        :|||         .|||.:|..:|       .|..|.|..|:.:         
Zfish   120 DLHIEGAENLSALSGKNVLIVEAIVDTGKTMKALLDHVEAFKPKMIKVAGLLVKRV--------- 175

  Fly   246 SSVVHTTPLPDFGG 259
              ...|..|||:.|
Zfish   176 --ASKTGYLPDYVG 187

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pgm1NP_524675.1 PGM1 6..560 CDD:100087 29/144 (20%)
prtfdc1bNP_955812.2 PRTases_typeI 6..224 CDD:444823 29/144 (20%)

Return to query results.
Submit another query.