DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pgm1 and R05F9.6

DIOPT Version :9

Sequence 1:NP_524675.1 Gene:Pgm1 / 44010 FlyBaseID:FBgn0003076 Length:560 Species:Drosophila melanogaster
Sequence 2:NP_494886.1 Gene:R05F9.6 / 173843 WormBaseID:WBGene00019890 Length:568 Species:Caenorhabditis elegans


Alignment Length:570 Identity:337/570 - (59%)
Similarity:429/570 - (75%) Gaps:12/570 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSLTVEIVATKPYEGQKPGTSGLRKKVKVFTQPNYTENFVQAILEAN-GAALAGSTLVVGGDGRF 64
            |.:.|....|||:.|||||||||||:|..|.|.|||||||||||:|. |:...||.|||||||||
 Worm     1 MGIAVVETPTKPFAGQKPGTSGLRKRVPEFQQQNYTENFVQAILDAGLGSKKKGSQLVVGGDGRF 65

  Fly    65 YCKEAAELIVRLSAANGVSKLLVGQNGILSTPAVSSLIR--HNKAL--GGIVLTASHNPGGPEND 125
            ...||..:|::::||||:|:|:|||||.|||||:|:|||  |...:  |||:||||||||||:.|
 Worm    66 LSMEATNVIIKIAAANGLSRLIVGQNGFLSTPALSNLIRKGHEGRVVDGGIILTASHNPGGPKGD 130

  Fly   126 FGIKFNCENGGPAPDAFTNHIYKITTEIKEYKLVRNLQIDISKVGVTSFDIAG-KPFTVEVIDSV 189
            |||||||||||||||..|:.||:|||:|.:|.:.::|:.|.::||...:||.| ..|.|:|||||
 Worm   131 FGIKFNCENGGPAPDQVTDAIYQITTKIDKYLIAKDLECDFTQVGRYEYDIEGVGHFVVDVIDSV 195

  Fly   190 ANYVRHMEEIFDFAKLKDFVSGKATGKPLKMRIDAMNGVTGSYVREIFLNRLGATESSVVHTTPL 254
            ..|:..|::||||.|:|..::|:.||:.|::.:|:|:|.||.|:..|.::.|||..|.::.|.|.
 Worm   196 TEYINLMQKIFDFPKIKSLLAGELTGRKLRVLLDSMHGATGPYISTILVDHLGADPSDLLRTVPK 260

  Fly   255 PDFGGLHPDPNLTYAKDLVDTVAQGDYDIGAAFDGDGDRNMIIGSKAFFVTPSDSLAVIAHYLEA 319
            |||||.||||||||||.||:.:..|::|:|||||||||||||:|...|||.|||||||||..::.
 Worm   261 PDFGGGHPDPNLTYAKTLVERLHTGEHDLGAAFDGDGDRNMILGKNGFFVCPSDSLAVIADNIDY 325

  Fly   320 IPYFQKNGVQGFARSMPTASAVDLVGRKLGKEVFEVPTGWKYFGNLMDAGRLCLCGEESFGTGSN 384
            ||||:...|.|||||||||.|||||.:..|.:|:|.|||||||||||||||:.:||||||||||:
 Worm   326 IPYFKTRKVAGFARSMPTAGAVDLVAKAKGLQVYETPTGWKYFGNLMDAGRIAICGEESFGTGSD 390

  Fly   385 HIREKDGIWAVLAWISVMQHTGKGIEDILKQHWSVYGRNYFTRYDYEECASDPCNEMVATMEKTI 449
            |||||||:||:|||:.::....:.:|:|:.:||..||||.|||||||...:...|.::..:|..:
 Worm   391 HIREKDGVWALLAWLQILADRKESVEEIVTKHWQKYGRNVFTRYDYENVDAAGANLLMTFLEAQL 455

  Fly   450 TAPEFVGKSYSSGGKTYKVKEADNFSYTDPVDKSVATKQGLRIVFEDGSRIVVRLSGTGSSGATV 514
              |.|||:.:|:.|.||||..||||.||||||.|||||||||||||||||:|.|||||||:|||:
 Worm   456 --PAFVGRDFSANGVTYKVAVADNFQYTDPVDGSVATKQGLRIVFEDGSRLVFRLSGTGSAGATI 518

  Fly   515 RLYIDSYEKEN----VLGQASVMLKPLIDIALEISQLPKFTGRNAPTVIT 560
            |||:|||...|    :|..|..:||||:.|||:..::.:||.|.||||||
 Worm   519 RLYVDSYIPSNDTSRLLLPAHELLKPLVLIALDTCKMEQFTNRKAPTVIT 568

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Pgm1NP_524675.1 PLN02307 1..560 CDD:177942 335/568 (59%)
PGM1 6..560 CDD:100087 333/563 (59%)
R05F9.6NP_494886.1 PLN02307 1..568 CDD:177942 335/568 (59%)
PGM1 6..568 CDD:100087 333/563 (59%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160167782
Domainoid 1 1.000 192 1.000 Domainoid score I1894
eggNOG 1 0.900 - - E1_COG0033
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H1979
Inparanoid 1 1.050 677 1.000 Inparanoid score I371
Isobase 1 0.950 - 0 Normalized mean entropy S456
OMA 1 1.010 - - QHG54024
OrthoDB 1 1.010 - - D175278at33208
OrthoFinder 1 1.000 - - FOG0001684
OrthoInspector 1 1.000 - - oto19664
orthoMCL 1 0.900 - - OOG6_100937
Panther 1 1.100 - - LDO PTHR22573
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R914
SonicParanoid 1 1.000 - - X1241
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1716.790

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