DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fad2 and scdb

DIOPT Version :9

Sequence 1:NP_651966.2 Gene:Fad2 / 44006 FlyBaseID:FBgn0029172 Length:355 Species:Drosophila melanogaster
Sequence 2:XP_005156902.1 Gene:scdb / 553734 ZFINID:ZDB-GENE-050522-12 Length:380 Species:Danio rerio


Alignment Length:317 Identity:148/317 - (46%)
Similarity:222/317 - (70%) Gaps:8/317 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 SDVETVDGGLSTELSNRKTTDGSKLELVWVNIVLFVILHISSLYGVWLL-FTSATWTTVVLFWPT 78
            :||.|....:..:....|......:::||.|::|..:||:.:|||:.:| |.|    ::.|.|..
Zfish    66 ADVTTTTEDVFDDSYVEKPGPSPPVQIVWRNVILMTLLHLGALYGMTILPFVS----SLTLIWTG 126

  Fly    79 V--VVTILGVSGGAHRLWAHRTFKANTPLKLIFLFLNTLAFQDAVYYWARDHRVHHKYTETDADP 141
            |  :|:.||::.||||||:||:::|:.||::.....|::|||:.:|.||||||||||::||||||
Zfish   127 VCFMVSALGITAGAHRLWSHRSYRASLPLRIFLAVANSMAFQNDIYEWARDHRVHHKFSETDADP 191

  Fly   142 YNSQRGWFFAHIGWLCCRKHPEVVEKGKQIDLSDLEADPLIMFQKKYYLLLMPIICFVLPTVLPM 206
            :|::||:||||||||..||||||::||:::...||:||.::|||:::|.|.:.::||::||::|.
Zfish   192 HNARRGFFFAHIGWLLVRKHPEVIDKGRKLTFEDLKADSVVMFQRRHYKLSVVVMCFLIPTLVPW 256

  Fly   207 YLWGESLNVSWHVMALLRWCLSLNLIWTVNSSAHMHGMRPYDKNICPVDQGFLIFFRVGEGYHNY 271
            :.|.|||..::.|..|||:.:.||..|.|||:|||.||||||.||.|.:..|:.|..:|||:|||
Zfish   257 FFWEESLWTAYLVPCLLRYAVVLNATWLVNSAAHMWGMRPYDHNINPRENKFVAFSAIGEGFHNY 321

  Fly   272 HHVFPWDYKSAELGKYSQDVTTKFIEFMAYLGWAYDLKSVSLDLVKQRVQRSGDGSH 328
            ||.||.||.::|.|. ..:||..||:.|.:||.|.|.:.|:.:.:..||||:|||||
Zfish   322 HHTFPHDYATSEFGS-RLNVTKAFIDLMCFLGLANDCRRVTHETILARVQRTGDGSH 377

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fad2NP_651966.2 Delta9-FADS-like 68..309 CDD:239582 122/242 (50%)
scdbXP_005156902.1 Delta9-FADS-like 118..358 CDD:239582 123/244 (50%)
FA_desaturase 122..326 CDD:278890 107/203 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 280 1.000 Domainoid score I1638
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 359 1.000 Inparanoid score I2172
OMA 1 1.010 - - QHG63267
OrthoDB 1 1.010 - - D296120at33208
OrthoFinder 1 1.000 - - FOG0000495
OrthoInspector 1 1.000 - - mtm6351
orthoMCL 1 0.900 - - OOG6_100468
Panther 1 1.100 - - O PTHR11351
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X207
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1211.980

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