DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fad2 and scd

DIOPT Version :9

Sequence 1:NP_651966.2 Gene:Fad2 / 44006 FlyBaseID:FBgn0029172 Length:355 Species:Drosophila melanogaster
Sequence 2:NP_942110.2 Gene:scd / 386661 ZFINID:ZDB-GENE-031106-3 Length:326 Species:Danio rerio


Alignment Length:299 Identity:148/299 - (49%)
Similarity:223/299 - (74%) Gaps:4/299 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 KTTDGSK--LELVWVNIVLFVILHISSLYGVWLLFTSATWTTVVLFWPTVVVTILGVSGGAHRLW 94
            |...|.|  :::||.|::|..:|||:::||::|: .||...|::..:...|...||::.|.||||
Zfish    27 KEKPGPKPPMKIVWRNVILMSLLHIAAVYGLFLI-PSAHPLTLLWAFACFVYGGLGITAGVHRLW 90

  Fly    95 AHRTFKANTPLKLIFLFLNTLAFQDAVYYWARDHRVHHKYTETDADPYNSQRGWFFAHIGWLCCR 159
            :||::||..||::.....|::|||:.:|.|:|||||||||:||||||:||.||:||:|:|||..|
Zfish    91 SHRSYKATLPLRIFLAIGNSMAFQNDIYEWSRDHRVHHKYSETDADPHNSNRGFFFSHVGWLLVR 155

  Fly   160 KHPEVVEKGKQIDLSDLEADPLIMFQKKYYLLLMPIICFVLPTVLPMYLWGESLNVSWHVMALLR 224
            |||||:|:|::::|:||:||.::|||:::|.|.:.::|||:|||:|.|:|||||.:::.:..|||
Zfish   156 KHPEVIERGRKLELTDLKADKVVMFQRRFYKLSVVLMCFVVPTVVPCYMWGESLWIAYFIPTLLR 220

  Fly   225 WCLSLNLIWTVNSSAHMHGMRPYDKNICPVDQGFLIFFRVGEGYHNYHHVFPWDYKSAELGKYSQ 289
            :.|.||..|.|||:|||.|.||||.||.|.:..|:.|..:|||||||||.||:||.::|.| :..
Zfish   221 YALGLNSTWLVNSAAHMWGNRPYDGNIGPRENRFVTFSAIGEGYHNYHHTFPYDYSTSEYG-WKL 284

  Fly   290 DVTTKFIEFMAYLGWAYDLKSVSLDLVKQRVQRSGDGSH 328
            ::||.|::.|.:||.|.:.|.||.:|:..||:|:||||:
Zfish   285 NLTTIFVDTMCFLGLASNRKRVSKELILARVKRTGDGSY 323

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fad2NP_651966.2 Delta9-FADS-like 68..309 CDD:239582 122/240 (51%)
scdNP_942110.2 Delta9-FADS-like 64..304 CDD:239582 122/240 (51%)
FA_desaturase 68..273 CDD:278890 109/204 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 280 1.000 Domainoid score I1638
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 359 1.000 Inparanoid score I2172
OMA 1 1.010 - - QHG63267
OrthoDB 1 1.010 - - D296120at33208
OrthoFinder 1 1.000 - - FOG0000495
OrthoInspector 1 1.000 - - mtm6351
orthoMCL 1 0.900 - - OOG6_100468
Panther 1 1.100 - - O PTHR11351
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X207
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1211.940

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