DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fad2 and Scd3

DIOPT Version :9

Sequence 1:NP_651966.2 Gene:Fad2 / 44006 FlyBaseID:FBgn0029172 Length:355 Species:Drosophila melanogaster
Sequence 2:NP_077770.1 Gene:Scd3 / 30049 MGIID:1353437 Length:359 Species:Mus musculus


Alignment Length:294 Identity:151/294 - (51%)
Similarity:210/294 - (71%) Gaps:8/294 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 KLELVWVNIVLFVILHISSLYGVWLLFTSATWTTVVLFWPTVVVTILGVSGGAHRLWAHRTFKAN 102
            |||.||.||:|..:||:.:|||:.|:.:...:|.:..| ...|::|.|:..|.||||:|||:||.
Mouse    68 KLEYVWRNIILMALLHVGALYGITLVPSCKLYTCLFAF-VYYVISIEGIGAGVHRLWSHRTYKAR 131

  Fly   103 TPLKLIFLFLNTLAFQDAVYYWARDHRVHHKYTETDADPYNSQRGWFFAHIGWLCCRKHPEVVEK 167
            .||::..:..||:|||:.||.||||||.|||::||.|||:||:||:||:|:|||..||||.|.||
Mouse   132 LPLRIFLIIANTMAFQNDVYEWARDHRAHHKFSETHADPHNSRRGFFFSHVGWLLVRKHPAVKEK 196

  Fly   168 GKQIDLSDLEADPLIMFQKKYY---LLLMPIICFVLPTVLPMYLWGESLNVSWHVMALLRWCLSL 229
            |.::|:|||:|:.|:|||::||   :|||   ||:|||::|.|.|||:...|::|..|||:.:.|
Mouse   197 GGKLDMSDLKAEKLVMFQRRYYKPGILLM---CFILPTLVPWYCWGETFLNSFYVATLLRYAVVL 258

  Fly   230 NLIWTVNSSAHMHGMRPYDKNICPVDQGFLIFFRVGEGYHNYHHVFPWDYKSAELGKYSQDVTTK 294
            |..|.|||:||::|.|||||||.|.....:....:|||:|||||.||:||.::|. ::..:.||.
Mouse   259 NATWLVNSAAHLYGYRPYDKNIDPRQNALVSLGSMGEGFHNYHHAFPYDYSASEY-RWHINFTTF 322

  Fly   295 FIEFMAYLGWAYDLKSVSLDLVKQRVQRSGDGSH 328
            ||:.||.||.|||.|.||...|..|::|:|||||
Mouse   323 FIDCMAALGLAYDRKRVSKATVLARIKRTGDGSH 356

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fad2NP_651966.2 Delta9-FADS-like 68..309 CDD:239582 126/243 (52%)
Scd3NP_077770.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..34
Delta9-FADS-like 97..337 CDD:239582 126/244 (52%)
FA_desaturase 102..306 CDD:278890 110/207 (53%)
Histidine box-1. /evidence=ECO:0000305 120..125 4/4 (100%)
Histidine box-2. /evidence=ECO:0000305 157..161 2/3 (67%)
Histidine box-3. /evidence=ECO:0000305 298..302 3/3 (100%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167845368
Domainoid 1 1.000 56 1.000 Domainoid score I10942
eggNOG 1 0.900 - - E1_COG1398
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H137370
Inparanoid 1 1.050 369 1.000 Inparanoid score I2119
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG63267
OrthoDB 1 1.010 - - D296120at33208
OrthoFinder 1 1.000 - - FOG0000495
OrthoInspector 1 1.000 - - mtm8712
orthoMCL 1 0.900 - - OOG6_100468
Panther 1 1.100 - - O PTHR11351
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X207
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1514.770

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