DRSC/TRiP Functional Genomics Resources

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Protein Alignment Fad2 and Scd1

DIOPT Version :9

Sequence 1:NP_651966.2 Gene:Fad2 / 44006 FlyBaseID:FBgn0029172 Length:355 Species:Drosophila melanogaster
Sequence 2:NP_033153.2 Gene:Scd1 / 20249 MGIID:98239 Length:355 Species:Mus musculus


Alignment Length:296 Identity:153/296 - (51%)
Similarity:210/296 - (70%) Gaps:12/296 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 KLELVWVNIVLFVILHISSLYGVWLLFTSATWTTV--VLFWPTVVVTILGVSGGAHRLWAHRTFK 100
            |||.||.||:|.|:||:..|||:.|:.:...:|.:  :.::.|   :.||::.||||||:|||:|
Mouse    64 KLEYVWRNIILMVLLHLGGLYGIILVPSCKLYTCLFGIFYYMT---SALGITAGAHRLWSHRTYK 125

  Fly   101 ANTPLKLIFLFLNTLAFQDAVYYWARDHRVHHKYTETDADPYNSQRGWFFAHIGWLCCRKHPEVV 165
            |..||::..:..||:|||:.||.||||||.|||::||.|||:||:||:||:|:|||..||||.|.
Mouse   126 ARLPLRIFLIIANTMAFQNDVYEWARDHRAHHKFSETHADPHNSRRGFFFSHVGWLLVRKHPAVK 190

  Fly   166 EKGKQIDLSDLEADPLIMFQKKYY---LLLMPIICFVLPTVLPMYLWGESLNVSWHVMALLRWCL 227
            |||.::|:|||:|:.|:|||::||   ||||   ||:|||::|.|.|||:...|..|...||:.|
Mouse   191 EKGGKLDMSDLKAEKLVMFQRRYYKPGLLLM---CFILPTLVPWYCWGETFVNSLFVSTFLRYTL 252

  Fly   228 SLNLIWTVNSSAHMHGMRPYDKNICPVDQGFLIFFRVGEGYHNYHHVFPWDYKSAELGKYSQDVT 292
            .||..|.|||:||::|.|||||||...:...:....||||:|||||.||:||.::|. ::..:.|
Mouse   253 VLNATWLVNSAAHLYGYRPYDKNIQSRENILVSLGAVGEGFHNYHHTFPFDYSASEY-RWHINFT 316

  Fly   293 TKFIEFMAYLGWAYDLKSVSLDLVKQRVQRSGDGSH 328
            |.||:.||.||.|||.|.||...|..|::|:|||||
Mouse   317 TFFIDCMAALGLAYDRKKVSKATVLARIKRTGDGSH 352

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Fad2NP_651966.2 Delta9-FADS-like 68..309 CDD:239582 127/245 (52%)
Scd1NP_033153.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 9..33
Delta9-FADS-like 93..333 CDD:239582 127/246 (52%)
FA_desaturase 98..301 CDD:278890 110/208 (53%)
Histidine box-1. /evidence=ECO:0000305 116..121 4/4 (100%)
Histidine box-2. /evidence=ECO:0000305 153..157 2/3 (67%)
Histidine box-3. /evidence=ECO:0000305 294..298 3/3 (100%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167845367
Domainoid 1 1.000 56 1.000 Domainoid score I10942
eggNOG 1 0.900 - - E1_COG1398
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 369 1.000 Inparanoid score I2119
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG63267
OrthoDB 1 1.010 - - D296120at33208
OrthoFinder 1 1.000 - - FOG0000495
OrthoInspector 1 1.000 - - mtm8712
orthoMCL 1 0.900 - - OOG6_100468
Panther 1 1.100 - - O PTHR11351
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X207
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1413.770

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