DRSC/TRiP Functional Genomics Resources

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Protein Alignment NHP2 and AT4G12600

DIOPT Version :9

Sequence 1:NP_001261849.1 Gene:NHP2 / 44005 FlyBaseID:FBgn0029148 Length:160 Species:Drosophila melanogaster
Sequence 2:NP_001190705.1 Gene:AT4G12600 / 826873 AraportID:AT4G12600 Length:183 Species:Arabidopsis thaliana


Alignment Length:179 Identity:40/179 - (22%)
Similarity:64/179 - (35%) Gaps:58/179 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 VNAIAKPMAGKKLAKKCYKLVKKAMKHKTFLRNGLKDVQTRLRKGETGICIFAGDVTPVDIMCHL 101
            ||..|.|:|..:|:.....||::|..:|. |:.|..:....|.:|.:...:.|.|..|::|:.||
plant     6 VNPKAYPLADSQLSITILDLVQQATNYKQ-LKKGANEATKTLNRGISEFIVMAADTEPLEILLHL 69

  Fly   102 PAVCEEK-------------------------------------------------------GIP 111
            |.:.|:|                                                       .:|
plant    70 PLLAEDKVFEFLLIVSLSYESQLVVSLALASFTGFTWVSSSYDKKIRLYWLLDSSFEIVIVDNVP 134

  Fly   112 YTYTPSRADLGAAMGVKRGTVALLVRQNE--EYKDLYDEVKEELSALNI 158
            |.:.||:..||.|..|.|..:|..|..||  :.|.....:|:.:..|.|
plant   135 YVFVPSKQALGRACDVTRPVIACSVTSNEASQLKSQIQHLKDAIEKLLI 183

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NHP2NP_001261849.1 Ribosomal_L7Ae 51..146 CDD:396000 31/151 (21%)
AT4G12600NP_001190705.1 Ribosomal_L7Ae 22..166 CDD:279573 30/144 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1358
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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