DRSC/TRiP Functional Genomics Resources

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Protein Alignment NHP2 and Rps12

DIOPT Version :9

Sequence 1:NP_001261849.1 Gene:NHP2 / 44005 FlyBaseID:FBgn0029148 Length:160 Species:Drosophila melanogaster
Sequence 2:NP_113897.2 Gene:Rps12 / 65139 RGDID:62024 Length:132 Species:Rattus norvegicus


Alignment Length:153 Identity:28/153 - (18%)
Similarity:54/153 - (35%) Gaps:44/153 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 ADESVVASG--DVTIKEEESYDDKLIFVNAIAKPMAGKKLAKKCYKLVKKAMKHKTFLRNGLKDV 74
            |:|.:.|.|  ||....:|                           ::|.|:.|....| |:::.
  Rat     2 AEEGIAAGGVMDVNTALQE---------------------------VLKTALIHDGLAR-GIREA 38

  Fly    75 QTRLRKGETGICIFAGDVTPVDIMCHLPAVCEEKGIPYTYTPSRADLGAAMGVKR---------- 129
            ...|.|.:..:|:.|.:......:..:.|:|.|..|..........||..:|:.:          
  Rat    39 AKALDKRQAHLCVLASNCDEPMYVKLVEALCAEHQINLIKVDDNKKLGEWVGLCKIDREGKPRKV 103

  Fly   130 -GTVALLVR---QNEEYKDLYDE 148
             |...::|:   :..:.||:.:|
  Rat   104 VGCSCVVVKDYGKESQAKDVIEE 126

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NHP2NP_001261849.1 Ribosomal_L7Ae 51..146 CDD:396000 20/108 (19%)
Rps12NP_113897.2 Ribosomal_L7Ae 16..111 CDD:396000 18/122 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1358
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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