DRSC/TRiP Functional Genomics Resources

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Protein Alignment NHP2 and SNU13

DIOPT Version :9

Sequence 1:NP_001261849.1 Gene:NHP2 / 44005 FlyBaseID:FBgn0029148 Length:160 Species:Drosophila melanogaster
Sequence 2:NP_001003796.1 Gene:SNU13 / 4809 HGNCID:7819 Length:128 Species:Homo sapiens


Alignment Length:122 Identity:38/122 - (31%)
Similarity:65/122 - (53%) Gaps:3/122 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 VNAIAKPMAGKKLAKKCYKLVKKAMKHKTFLRNGLKDVQTRLRKGETGICIFAGDVTPVDIMCHL 101
            ||..|.|:|...|.||...||:::..:|. ||.|..:....|.:|.:...:.|.|..|::|:.||
Human     6 VNPKAYPLADAHLTKKLLDLVQQSCNYKQ-LRKGANEATKTLNRGISEFIVMAADAEPLEIILHL 69

  Fly   102 PAVCEEKGIPYTYTPSRADLGAAMGVKRGTVA--LLVRQNEEYKDLYDEVKEELSAL 156
            |.:||:|.:||.:..|:..||.|.||.|..:|  :.:::..:.|.....:::.:..|
Human    70 PLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERL 126

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NHP2NP_001261849.1 Ribosomal_L7Ae 51..146 CDD:396000 31/96 (32%)
SNU13NP_001003796.1 SNU13 7..128 CDD:411046 37/121 (31%)
Interaction with U4 snRNA and U4atac snRNA. /evidence=ECO:0000269|PubMed:17412961, ECO:0000269|PubMed:21784869 36..48 3/11 (27%)
Important for U4 snRNA-binding. /evidence=ECO:0000269|PubMed:10545122 96..128 4/31 (13%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1358
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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