DRSC/TRiP Functional Genomics Resources

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Protein Alignment NHP2 and SNU13

DIOPT Version :10

Sequence 1:NP_651965.1 Gene:NHP2 / 44005 FlyBaseID:FBgn0029148 Length:160 Species:Drosophila melanogaster
Sequence 2:NP_004999.1 Gene:SNU13 / 4809 HGNCID:7819 Length:128 Species:Homo sapiens


Alignment Length:386 Identity:74/386 - (19%)
Similarity:121/386 - (31%) Gaps:158/386 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   562 TLPIVKT-FFCKVNSAPQTSPMAKSENKLLFTFADVI--KMTNNFGQVLGK----------GGFG 613
            |.|..:| .|...||....|..|.:||    ||:..:  |..|:|.:....          |..|
Human   341 TPPATQTQTFRAPNSGSPASKAAAAEN----TFSRRVESKAQNHFEETNSSSQNSSEPYTCGACG 401

  Fly   614 TVYHGFYDNL---------------------------------QVAVKLLSETSAQGF------- 638
            ..:. ||.||                                 |......:.|:..|.       
Human   402 IQFQ-FYSNLLEHMQSHAADNENNITSNQSRSPPAAVEEKWKPQAQRNSANNTTTSGLTPNSVIP 465

  Fly   639 -KEFRSEVEVLVRVHHVNLTALI------------GYFHEGDQMGL--IYEFMANGN--MADHLA 686
             ||.::..|.|:||...:|.||.            .....|.:.|.  :.|.:.|.|  ...||.
Human   466 EKERQNIAERLLRVMCADLGALSVVSGKEFLKLAQTLVDSGARYGAFSVTEILGNFNTLALKHLP 530

  Fly   687 GKYQHTLSWRQRLQIALDAAQGLEYLHCGCKPPIVHRDVKTSNILLNEKNRAKLADFGLSRSFHT 751
            ..|       .::::.:..|.|                   ||..|           |:..:.|:
Human   531 RMY-------NQVKVKVTCALG-------------------SNACL-----------GIGVTCHS 558

  Fly   752 ES---------------RSHVSTLVAGTPGYLDPLCFETNGLNEKSDIYSFGVVLLEMITGKTVI 801
            :|               .:|:.:.|.|..|               :||...|.::...:  :.|:
Human   559 QSVGPDSCYILTAYQAEGNHIKSYVLGVKG---------------ADIRDSGDLVHHWV--QNVL 606

  Fly   802 KE---SQTKRVHVSDWVIS---------ILR-STNDVNNVIDSKMAK-DFDVNSVWKVVEL 848
            .|   |:.:.|:|:|..:|         .|| |...:|:|:.|.::| .....|:.:|:||
Human   607 SEFVMSEIRTVYVTDCRVSTSAFSKAGMCLRCSACALNSVVQSVLSKRTLQARSMHEVIEL 667

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NHP2NP_651965.1 Ribosomal_L7Ae 51..146 CDD:426153
SNU13NP_004999.1 SNU13 7..128 CDD:411046
Interaction with U4 snRNA and U4atac snRNA. /evidence=ECO:0000269|PubMed:17412961, ECO:0000269|PubMed:21784869 36..48
Important for U4 snRNA-binding. /evidence=ECO:0000269|PubMed:10545122 96..128
Blue background indicates that the domain is not in the aligned region.

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