DRSC/TRiP Functional Genomics Resources

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Protein Alignment ScsbetaG and LSC2

DIOPT Version :9

Sequence 1:NP_001286941.1 Gene:ScsbetaG / 44001 FlyBaseID:FBgn0029118 Length:416 Species:Drosophila melanogaster
Sequence 2:NP_011760.3 Gene:LSC2 / 853159 SGDID:S000003476 Length:427 Species:Saccharomyces cerevisiae


Alignment Length:397 Identity:177/397 - (44%)
Similarity:258/397 - (64%) Gaps:8/397 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 RNLNLLEFQSKDLLQKYGVAIQQ-FKVLNNSKADAEVVKTFECPEYVVKAQILAGGRGKGTFDNG 84
            |:|::.|::|..||::||:...: |......:| .|..|.....:.|:|||.|.||||||.||.|
Yeast    29 RHLSIHEYRSAQLLREYGIGTPEGFPAFTPEEA-FEAAKKLNTNKLVIKAQALTGGRGKGHFDTG 92

  Fly    85 FKGGVHITTNKSEVLSLTQQMIGNRLITKQTPKSGILVNKVMVARSINITRETYLCILLDREHNG 149
            :|.|||:..:..:...:.::|:.:.||||||..:|..|:.|.:.:.::...|.||.||:||:...
Yeast    93 YKSGVHMIESPQQAEDVAKEMLNHNLITKQTGIAGKPVSAVYIVKRVDTKHEAYLSILMDRQTKK 157

  Fly   150 PVLIASPAGGMDIEAVAEETPEKIKTVPLDIGKPIPESTLLEVAKFLEFKGDSVKRCAEEIQKLY 214
            |::|||..|||:||.|||.||:.||...::..|.:......:|||.|.|..|:....|:.:..||
Yeast   158 PMIIASSQGGMNIEEVAERTPDAIKKFSIETSKGLSPQMAKDVAKSLGFSPDAQDEAAKAVSNLY 222

  Fly   215 TLFKAVDAVQIEINPLAETDKG---EVISVDAKLNFDDNAQFRQKDIFS-MDVTEEESDPREVEA 275
            .:|...||.|:|||||:|.:..   :::..|||..|||||.|||:.|:| .|:::|  ||.||:|
Yeast   223 KIFMERDATQVEINPLSEIEHDPTHKIMCTDAKFGFDDNASFRQEKIYSWRDLSQE--DPDEVKA 285

  Fly   276 AKYNLNYVAMDGNIGCLVNGAGLAMATMDIIKLNGGEPANFLDVGGGVREDQVAKAFEILTADPK 340
            .||:||:|.:.||||||||||||||||||:||||||:||||||.|||...:.:.:.||::.::..
Yeast   286 KKYDLNFVKLKGNIGCLVNGAGLAMATMDVIKLNGGDPANFLDCGGGATPETIKQGFELILSNKN 350

  Fly   341 VKGILVNVFGGIVNCATIANGIVAASKKLQLNVPLVVRLEGTNVNQAREILKNSGLPIQTASDLD 405
            |..|.||:|||||.|..:|.|:|.|:::|::.||:|.||:||.|.:.|:|:..||:.|.:..:||
Yeast   351 VDAIFVNIFGGIVRCDYVALGLVEAARELEVRVPIVARLQGTKVEEGRDIINKSGVKIYSFDELD 415

  Fly   406 DAAHKAV 412
            .||.|.|
Yeast   416 PAAKKVV 422

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ScsbetaGNP_001286941.1 sucC 24..416 CDD:234813 175/394 (44%)
ATP-grasp_4 24..232 CDD:302634 80/208 (38%)
Ligase_CoA 292..412 CDD:278948 63/119 (53%)
LSC2NP_011760.3 sucC 33..424 CDD:234813 175/393 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157342226
Domainoid 1 1.000 148 1.000 Domainoid score I957
eggNOG 1 0.900 - - E1_COG0045
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60702
OrthoFinder 1 1.000 - - FOG0001148
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100409
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
76.650

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