DRSC/TRiP Functional Genomics Resources

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Protein Alignment Spt6 and GTB1

DIOPT Version :9

Sequence 1:NP_001284936.1 Gene:Spt6 / 44000 FlyBaseID:FBgn0028982 Length:1831 Species:Drosophila melanogaster
Sequence 2:NP_001321759.1 Gene:GTB1 / 842855 AraportID:AT1G65440 Length:1647 Species:Arabidopsis thaliana


Alignment Length:1915 Identity:475/1915 - (24%)
Similarity:833/1915 - (43%) Gaps:408/1915 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 ESEEEEELDVNERKRLKKLKAAVSDSSEEEEDDEERLREELKDLI----DDNPIEEDDGSGYDSD 71
            :.||:.||:.::.:.:....|...::.:||:||:.....|....|    |:...||:|....|||
plant     8 DDEEDHELEDDDGEPVHGDPAEHDENDDEEDDDDVGNEYENDGFIVNDEDEEEEEEEDEERKDSD 72

  Fly    72 GVGSGKKRKKHEDDDLDDRLEDDDYDLIEENLGVKVERRKRFKRLRRIHDNESDGEEQHVDEGL- 135
            .....||:|:.:.   |:.|::|||.|:::| .||.::| ::|||::....:.:|:.:..|:.. 
plant    73 EERQKKKKKRKKK---DEGLDEDDYLLLQDN-NVKFKKR-QYKRLKKAQREQGNGQGESSDDEFD 132

  Fly   136 --------VREQIAEQLFDEND-----ESIGHRSERSHREADDYDDVDTESDADDFIV---DDNG 184
                    ..::|.::|||:.|     :.:|...:....|    |.|.:|.:..||||   |::|
plant   133 SRGGTRRSAEDKIKDRLFDDVDVDDPPDDVGDEEDLVVEE----DVVGSEDEMADFIVDEDDEHG 193

  Fly   185 RPIA--EKKKKRRPIFTDASLQEGQDIFGVDFDYDDFSKYEEDDYEDDSEGDEYDEDLGVGDDTR 247
            .|..  .||||.|......::::..:|||   |.|:.                          ..
plant   194 PPKRGNSKKKKYRQGSDITAMRDANEIFG---DVDEL--------------------------LT 229

  Fly   248 VKKKKALKKKVVKKTIFDIYEPSELKRGHFTDMDNEIRKTDIPERMQLREVPVTPVPEGSDELDL 312
            ::||.....:.:::.:.|.:||:.|...:.|..|:|||:.|||||||:.|......|.....::.
plant   230 IRKKGLASNQRMERRLEDEFEPTVLSEKYMTGNDDEIRQLDIPERMQISEESTGSPPVDEISIEE 294

  Fly   313 EAEWIYKYAFCKHTVSEQEKPESREKMRKPPTT-------VNK--IKQTLEFIRNQQLEVPFIAF 368
            |:.|||              .:...::|:...|       |||  |.:.||....|:||:||||.
plant   295 ESNWIY--------------AQLASQLRESDGTFDGRGFSVNKDDIAKFLELHHVQKLEIPFIAM 345

  Fly   369 YRKEYVKPELNIDD-----------------LWKVYYYDGIWCQLNERKRKLKVLFEKMRQFQLD 416
            ||||..:..|:..|                 .|.::..|..|..|.:||..|...:.|..:    
plant   346 YRKEQCRSLLDTGDFDGANQGKKPETKWHKVFWMIHDLDKKWLLLRKRKMALHGYYTKRYE---- 406

  Fly   417 TLCADTDQPVPDDVRL-----ILDSDFERLADVQSMEELKDVHMYFLLNYSHELPRMQAEQRRKA 476
                :..:.|.|:.||     :.:|..:.|...::..|:.||...|.|::               
plant   407 ----EESRRVYDETRLNLNQYLFESVIKSLKVAETEREVDDVDSKFNLHF--------------- 452

  Fly   477 IQERREAKARRQAAAAENGDDAAEAIVVPEPEDDDDPELIDYQLKQASNSSPYAVFRKAGICGFA 541
                         ...|.|.|                   :.|.|:....|.|::..|||:...|
plant   453 -------------PPGEIGVD-------------------EGQYKRPKRKSQYSICSKAGLWEVA 485

  Fly   542 KHFGLTPEQYAENLRDNYQRNEITQESIGPTELAKQYLSPRFMTTDEVIHAAKYVVARQLAQEPL 606
            ..||.:.||....|......:|:......|.|:||.::...|..:..|:..|:::.|.:::.||.
plant   486 NKFGYSAEQLGLALSLEKLVDELEDAKETPEEMAKNFVCAMFENSLAVLKGARHMAAVEISCEPS 550

  Fly   607 LRKTMREVYFDRARINIRPTKNGMVLIDENSPVYSMKYVAKKPVSDLFGDQFIKLMMAEEEKLLE 671
            ::|.:|.:|.:.|.::..||.:|..:||.......:|::.:||:|...|.|::.:...||||||:
plant   551 VKKYVRGIYMENAVVSTSPTADGNTVIDSFHQFSGIKWLREKPLSKFEGAQWLLIQKGEEEKLLQ 615

  Fly   672 ITFLEEFEGNACANGTPGDY----VEESKALYQLDQFAKHVQEWNKLRAECVQLALQKWVIPDLI 732
            :||           ..|.:|    :.:....|.....:|:.|.||:.|...::.||..:::|.:.
plant   616 VTF-----------KLPENYMNRLISDCNEHYLSVGVSKYAQLWNEQRKLILEDALHAFLLPSME 669

  Fly   733 KELRSTLHEEAQQFVLRSCTGKLYKWLKVAPYKPQLPPDFGYEEWSTLRGIRVLGLAYDPDHSVA 797
            ||.||.|...|:..:|......|:..:...||:.: ..|...:|.:   ..||:...:.|.....
plant   670 KEARSLLTSRAKSRLLSEYGQALWNKVSAGPYQKK-EMDINLDEEA---APRVMACCWGPGKPPN 730

  Fly   798 AFCAVTTVEGDISDYLRLPNILKRKNSYNLEEKAQKLADLRKLSDFIKMKKPHIVVIGAESRDAQ 862
            .|..:.: .|::.|.|...::..|  |.|:.::.:|.:|..::..|:...:||:|.:||.:....
plant   731 TFVMLDS-SGEVLDVLYAGSLTSR--SQNVNDQQRKKSDQDRVLKFMMDHQPHVVALGAVNLSCT 792

  Fly   863 NIQADIKEILHEL------ETSEQFPPIEVEIIDNELAKIYANSKKGESDFKEYPPLLKQAASLA 921
            .::.||.|::.::      :.......:.:..:|..|.::|.||:.......:....:::|.:|.
plant   793 RLKDDIYEVIFQMVEEKPRDVGHGMDDLSIVYVDESLPRLYENSRISGEQLPQQSGNVRRAVALG 857

  Fly   922 RKMQDPLVEYSQLCDADDEILCLRYHPLQERVPREQLLEQLSLQFINRTSEVGLDINLMVQNSRT 986
            |.:|:||...:.||....|||..:.|||:..:..::....:....::.|::||:||||...:...
plant   858 RYLQNPLAMVATLCGPGREILSWKLHPLENFLQLDEKYGMVEQVMVDITNQVGIDINLAASHDWF 922

  Fly   987 INLLQYICGLGPRKGQALLKLLKQSNQRLENRTQLVTVCH-LGPRVFINCSGFIKIDTSSLGDST 1050
            .:.||:|.||||||..:|.:.|.::......:.   .:.| ||.:||:|.:||::|..|.|..|:
plant   923 FSPLQFISGLGPRKAASLQRSLVRAGSIFVRKD---LIMHGLGKKVFVNAAGFLRIRRSGLAASS 984

  Fly  1051 EAYVEVLDGSRVHPETYEWARKMAIDAMEYD------DEETNPAGALEEILESPERLKDLDLDAF 1109
            ..::::||.:|:|||:|..|:::|.|..:.|      |:|.....|:|.:.:.|..|:.:.||.:
plant   985 SQFIDLLDDTRIHPESYSLAQELAKDIYDEDVRGDSNDDEDAIEMAIEHVRDRPASLRKVVLDEY 1049

  Fly  1110 AVELERQGFGSKSITLYDIRNELSCLYKDYRTPYTKPSAEELFDMLTKETPDSFYVGKCVTAMVT 1174
            ....:|:   :|..|..:|..||||.::|:|.|:.:||.:|.|.|::.||.|:...|:.|.|.| 
plant  1050 LASKKRE---NKKETYSNIIRELSCGFQDWRIPFKEPSPDEEFYMISGETEDTIAEGRIVQASV- 1110

  Fly  1175 GFTYRRPQGDQLDSANPVRLDSNESWQCPFCHKDDFPELSEVWNHFDANACPGQPSGVRVRLENG 1239
                ||.|..:                 ..|                             .|::|
plant  1111 ----RRLQNGR-----------------AIC-----------------------------VLDSG 1125

  Fly  1240 LPGFIHIKNLSD--RQVRNPEERVRVSQMIHVRIIKIDIDRFSVECSSRTADLKDVNNEWRPRRD 1302
            |.|.:..::.||  |.:.:..::::...::..:|..|...|:.|....:.:::::..::.....|
plant  1126 LTGMLMKEDFSDDGRDIVDLADQLKEGDILTCKIKSIQKQRYQVFLICKESEMRNNRHQHNQNVD 1190

  Fly  1303 NYYDYVTEEQDNRKVSDAKAR---ALKRKIYARRVIAHPSFFNKSYAEVVAMLAEADQGEVALRP 1364
            .||.   |::::.::...|||   .|.||.:..|:|.||.|.|.:..:....|::.|.||..:||
plant  1191 AYYH---EDRNSLQLVKEKARKEKELVRKHFKSRMIVHPRFQNITADQATEYLSDKDFGESIVRP 1252

  Fly  1365 SSKSKDHLTATWKVADDIFQHIDVREEGKEN-DFS----LGRSLWIGTEEFEDLDEIIARHIMPM 1424
            ||:..:.||.|.|:.|.::.|.::.|.|||| |.:    :|::|.||.:.||||||::.|::.|:
plant  1253 SSRGLNFLTLTLKIYDGVYAHKEIAEGGKENKDITSLQCIGKTLTIGEDTFEDLDEVMDRYVDPL 1317

  Fly  1425 ALAARELIQYKYYKPNMVTGDENERDVMEKLLREEKANDPKKIHYFFTASRAMPGKFLLSYLPKT 1489
            ....:.::.|:.::    .|.::|   ::.|||.||..:|.:|.|.|..|...||.|:|||:..|
plant  1318 VSHLKTMLNYRKFR----KGTKSE---VDDLLRIEKGENPSRIVYCFGISHEHPGTFILSYIRST 1375

  Fly  1490 KVRHEYVTVMPEGYRFRGQIFDTVNSLLRWFKEHWLDP--TATPASASASNLTPLHLMRPPPTIS 1552
            ...|||:.:.|:|::||.::|:.::.|:.:|:.|..||  .:.|:..|.:...|   ||.|....
plant  1376 NPHHEYIGLYPKGFKFRKRMFEDIDRLVAYFQRHIDDPLQESAPSIRSIAAKVP---MRSPADHG 1437

  Fly  1553 S-------SSQTSLGPQAPYSVTGSVTGGTPR---------SGISSAVGG--------------- 1586
            |       |||:..|.:.....:||..||..|         ||.....||               
plant  1438 SSGGSGWGSSQSEGGWKGNSDRSGSGRGGEYRNGGGRDGHPSGAPRPYGGRGRGRGRGRRDDMNS 1502

  Fly  1587 ---GGSSAYSITQSIT---GYGTSGSSAPGAGVSSSHYGSSSTPSFGAINTPYTPSGQTPFMTPY 1645
               .|:..:....:.|   |:|.||....|:..:....|..||..:|                  
plant  1503 DRQDGNGDWGNNDTGTADGGWGNSGGGGWGSESAGKKTGGGSTGGWG------------------ 1549

  Fly  1646 TPHASQTPRYGHNVPSPSSQSSSSQRHHYGSSSGTGSTPRY-HDMGG------GGGGGVGGGGGS 1703
                           |.|..:.|.....:||.||.|.:..: :|.||      ||.|...|||||
plant  1550 ---------------SESGGNKSDGAGSWGSGSGGGGSGGWGNDSGGKKSSEDGGFGSGSGGGGS 1599

  Fly  1704 NAYSMQPHHQQRAKENLDWQLANDAWARRRPQQHQSHQSYHAQQQHHHSQQQPHMGMSMNMGITM 1768
                             ||  .|::..::                           .|.:.|   
plant  1600 -----------------DW--GNESGGKK---------------------------SSADGG--- 1615

  Fly  1769 SLGRGTGG---GGGGGYGSTPVNDYSTGGG 1795
             .|..:||   .|.||:|:.|.:..|.|||
plant  1616 -WGSESGGKKSDGEGGWGNEPSSRKSDGGG 1644

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spt6NP_001284936.1 HTH_44 308..411 CDD:291314 33/128 (26%)
RuvC_resolvase 781..935 CDD:304378 32/159 (20%)
HHH_5 939..1042 CDD:304555 32/103 (31%)
DLD 1057..1159 CDD:291540 35/107 (33%)
S1 1220..1281 CDD:278972 10/62 (16%)
SH2_2 1309..1523 CDD:291307 75/221 (34%)
SH2_Nterm_SPT6_like 1336..1420 CDD:198174 34/88 (39%)
SH2_Cterm_SPT6_like 1429..1524 CDD:198182 30/94 (32%)
GTB1NP_001321759.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 141 1.000 Domainoid score I1521
eggNOG 1 0.900 - - E1_COG2183
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H40661
Inparanoid 1 1.050 513 1.000 Inparanoid score I299
OMA 1 1.010 - - QHG55107
OrthoDB 1 1.010 - - D56990at2759
OrthoFinder 1 1.000 - - FOG0004092
OrthoInspector 1 1.000 - - otm2407
orthoMCL 1 0.900 - - OOG6_102925
Panther 1 1.100 - - LDO PTHR10145
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2838
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.840

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