DRSC/TRiP Functional Genomics Resources

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Protein Alignment Spt6 and AT1G63210

DIOPT Version :9

Sequence 1:NP_001284936.1 Gene:Spt6 / 44000 FlyBaseID:FBgn0028982 Length:1831 Species:Drosophila melanogaster
Sequence 2:NP_176510.1 Gene:AT1G63210 / 842626 AraportID:AT1G63210 Length:1197 Species:Arabidopsis thaliana


Alignment Length:1353 Identity:351/1353 - (25%)
Similarity:625/1353 - (46%) Gaps:216/1353 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   221 KYEEDDYEDDSEGDEYDEDLGVGDDTRVKK--KKALK-KKVVKKTIFDIYEPSELKRGHFTDMDN 282
            ||::.   .||....|..|: .||...:.|  ||.|| .:.:::.:.|.:||..|...:.|:.|:
plant     7 KYKQG---TDSNALRYANDV-FGDPEELLKLRKKDLKYNEKIERKLEDEFEPMVLSEKYMTEKDD 67

  Fly   283 EIRKTDIPERMQLREVPVTPVPEGSDELDLEAEWIYKYAFCKHTVSEQEKPESREKMRKPPTTVN 347
            ||||.|:|||||:.|..:..|......:..|:.|||....       ||:.:.        ..:|
plant    68 EIRKLDVPERMQIFEEAIGIVSLDDMSIQEESNWIYARLL-------QEQGQG--------CLIN 117

  Fly   348 K--IKQTLEFIRNQQLEVPFIAFYRKEYVKPELNIDD---------------------LWKVYYY 389
            |  |.:.||....|:||:||||.||||..:..|:..|                     ||.:...
plant   118 KDDIVKFLEMFHVQKLEIPFIAMYRKEQCRSLLDSSDDDHDGSDFNLDKKLETKWHKVLWMIQDL 182

  Fly   390 DGIWCQLNERKRKLKVLFEKMRQFQLDTLCADTDQPVPDDVRLILDSDFERLADVQSMEELKDVH 454
            |..|..|  ||||..:.....::|:.:|..:|.:       :.:.:|..:.|...::..|:.||.
plant   183 DRKWVLL--RKRKTALFGYYTKRFEEETCMSDLN-------KSLFESVIKSLQAAETEREVDDVD 238

  Fly   455 MYFLLNYSHELPRMQAEQRRKAIQERREAKARRQAAAAENGDDAAEAIVVPEPEDDDDPELIDYQ 519
            ..|.|::.|                                                 .|:.:.|
plant   239 SKFNLHFPH-------------------------------------------------CEIDEGQ 254

  Fly   520 LKQASNSSPYAVFRKAGICGFAKHFGLTPEQYAENLR-DNYQRNEITQESIGPTELAKQYLSPRF 583
            .|:.:..|.|::..|.||..||..||.:.||....|. :....:|:......|.|:|..|....|
plant   255 YKRPNRKSQYSICSKFGIKEFANKFGYSAEQLGLALSLEKVFVDELEDAKKTPEEMALNYECAMF 319

  Fly   584 MTTDEVIHAAKYVVARQLAQEPLLRKTMREVYFDRARINIRPTKNGMVLIDENSPVYSMKYVAKK 648
            ..:..|:..|:::.|.:::.||.:||.:|.::.:.|.::..||.:|.|:||......::|::::|
plant   320 GDSQAVLKGARHMAAVEISCEPSIRKYVRGIFMENAVVSTSPTPDGNVVIDSFHRFSAVKWLSEK 384

  Fly   649 PVSDLFGDQFIKLMMAEEEKLLEITF-LEEFEGNACANGTPGDYVEESKALYQLDQFAKHVQEWN 712
            |:....|.|::.:..|||||||::|| |.|.:.|.        .:.|....|.....:|:.|.||
plant   385 PLRKFDGVQWLLIQKAEEEKLLQVTFKLPENQMNR--------IISECSEHYLSVGVSKYAQLWN 441

  Fly   713 KLRAECVQLALQKWVIPDLIKELRSTLHEEAQQFVLRSCTGKLYKWLKVAPYKPQLPPDFGYEEW 777
            :.|...::.|:..:|:|.:.||.||.|...|:..:|......|:..:...||:..  .:...||.
plant   442 EQRKLILEDAVHGFVLPSMEKEARSLLTSRAKTQLLSEYGQVLWNKVSSGPYRRN--NNTSEEEA 504

  Fly   778 STLRGIRVLGLAYDPDHSVAAFCAVTTVEGDISDYLRLPNILKRKNSYNLEEKAQKLADLRKLSD 842
            :.    |||...:.|.:....|..:.: .|::.|.|...:|..|....| ::|.:|: |..:...
plant   505 AP----RVLACCWGPGNPETTFVMLDS-SGELVDVLYSGSIGLRSRDVN-DQKRKKM-DQDRFLK 562

  Fly   843 FIKMKKPHIVVIGAESRDAQNIQADIKEILHELETSEQFPPIEVE---------IIDNELAKIYA 898
            ||:..:|.::.:.|.:.....::.:|.|.:.::  .|:.|...|:         ..|..|.::|.
plant   563 FIRDHQPDVLALAAVNLSCVRLKDEIYEAIFQM--VEELPLNYVDDRIYDFPLVYADESLPRLYE 625

  Fly   899 NSKKGESDFKEYPPLLKQAASLARKMQDPLVEYSQLCDADDEILCLRYHPLQERVPREQLLEQLS 963
            ||:.......:...::|:|.||.|.:|:||...|.||....:||..:.|..|:.:..::..|.:.
plant   626 NSRISSEQLPQQAGIVKRAVSLGRYLQNPLAMISTLCGPGRDILSWKLHSFQDFLDPDEKYEMVE 690

  Fly   964 LQFINRTSEVGLDINLMVQNSRTINLLQYICGLGPRKGQALLKLLKQSNQRLENRTQLVTVCH-L 1027
            ...::.|::||:||||...:....:.||::.||||||..:|.|.|.::.. :..|.:|:.  | :
plant   691 QVMVDITNQVGIDINLAASHEWLFSPLQFVSGLGPRKAASLQKSLVRAGS-IFVRKELIN--HGI 752

  Fly  1028 GPRVFINCSGFIKIDTSSLGDSTEAYVEVLDGSRVHPETYEWARKMAIDAMEYD----DEETNPA 1088
            |.:||:|.:||::|..|.|..|:..::::||.:|:|||:|..|:::|.|...:|    ||:....
plant   753 GKKVFVNAAGFLRIRRSGLACSSSQFIDLLDDTRIHPESYGLAQELAKDVYAHDTVRGDEDDAIE 817

  Fly  1089 GALEEILESPERLKDLDLDAFAVELERQGFGSKSITLYDIRNELSCLYKDYRTPYTKPSAEELFD 1153
            .|:|.:.:.|..|:.:.||.:   |..:...:|..|...|..||||.::|:|:.:.:..::|.|.
plant   818 MAIEHVRDEPASLRKIVLDEY---LRSKNQENKKETYSLIMRELSCGFQDWRSLFKEVDSDEEFY 879

  Fly  1154 MLTKETPDSFYVGKCVTAMVTGFTYRRPQGDQLDSANPVRLDSNESWQCPFCHKDDFPELSEVWN 1218
            |::.||.::...|:.|.|.|...|                                         
plant   880 MISGETKETIGEGRIVQATVKKVT----------------------------------------- 903

  Fly  1219 HFDANACPGQPSG-VRVRLENGLPGFIHIKNLSD--RQVRNPEERVRVSQMIHVRIIKIDIDRFS 1280
                       || .:..|:.||||.:..::.||  |.:.:...::....::..::..|...|:.
plant   904 -----------SGKAKCVLDCGLPGILLKEDYSDDGRDIVDLSNKLCEGDIVTCKVKSILKQRYH 957

  Fly  1281 VECSSRTADLKDVNNEWRPRRDNYYDYVTEEQDNRKVSDAKARALKRKIYARRVIAHPSFFNKSY 1345
            |....:.::::...|     ..:..||..||:.|..:.:.:....::|.:..|:|.||.|.|.:.
plant   958 VLLVCKESEMRKHRN-----LGDVDDYYHEEKRNSVLIEKEKVPKEKKQFKSRMIVHPRFQNITA 1017

  Fly  1346 AEVVAMLAEADQGEVALRPSSKSKDHLTATWKVADDIFQHIDVREEGKEN-DF----SLGRSLWI 1405
            .:....|::.:.||..:||||:..:|||...|::|:::.:.::.|..||| |.    .:|::|.|
plant  1018 EQATVYLSDKNIGESIVRPSSRGLNHLTLMIKISDNVYANKEIIEGEKENKDIVSLQRIGKTLKI 1082

  Fly  1406 GTEEFEDLDEIIARHIMPMALAARELIQYKYYKPNMVTGDENERDVMEKLLREEKANDPKKIHYF 1470
            |.|.||||||::.|::.|:......::.::.::    ||.::|   ::.|||.||..:||.:.|.
plant  1083 GNETFEDLDEVMDRYVDPLVTHLMTMLNHRKFR----TGTKSE---IDDLLRVEKGVNPKMVVYS 1140

  Fly  1471 FTASRAMPGKFLLSYLPKTKVRHEYVTVMPEGYRFRGQIFDTVNSLLRWFKEH 1523
            |..|...||.|:|||:......|||:.:.|:|::||.::|..::.|..:||.|
plant  1141 FGVSHEHPGSFILSYIRSANPHHEYIGLYPKGFKFRKRMFGDLDKLAAYFKRH 1193

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spt6NP_001284936.1 HTH_44 308..411 CDD:291314 33/125 (26%)
RuvC_resolvase 781..935 CDD:304378 37/162 (23%)
HHH_5 939..1042 CDD:304555 32/103 (31%)
DLD 1057..1159 CDD:291540 32/105 (30%)
S1 1220..1281 CDD:278972 12/63 (19%)
SH2_2 1309..1523 CDD:291307 70/218 (32%)
SH2_Nterm_SPT6_like 1336..1420 CDD:198174 32/88 (36%)
SH2_Cterm_SPT6_like 1429..1524 CDD:198182 31/95 (33%)
AT1G63210NP_176510.1 HTH_44 90..202 CDD:291314 33/128 (26%)
Tex 115..972 CDD:225094 240/991 (24%)
Tex_N 135..360 CDD:286460 60/282 (21%)
YqgFc 506..624 CDD:128971 25/126 (20%)
HHH_5 666..766 CDD:304555 32/102 (31%)
DLD 782..885 CDD:291540 32/105 (30%)
S1 891..963 CDD:197648 18/123 (15%)
SH2_2 1001..1193 CDD:291307 66/198 (33%)
SH2_Nterm_SPT6_like 1009..1097 CDD:198174 32/87 (37%)
SH2_Cterm_SPT6_like 1108..1194 CDD:198182 31/93 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 141 1.000 Domainoid score I1521
eggNOG 1 0.900 - - E1_COG2183
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H40661
Inparanoid 1 1.050 513 1.000 Inparanoid score I299
OMA 1 1.010 - - QHG55107
OrthoDB 1 1.010 - - D56990at2759
OrthoFinder 1 1.000 - - FOG0004092
OrthoInspector 1 1.000 - - otm2407
orthoMCL 1 0.900 - - OOG6_102925
Panther 1 1.100 - - O PTHR10145
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2838
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1413.840

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