DRSC/TRiP Functional Genomics Resources

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Protein Alignment Spt6 and srbd1

DIOPT Version :9

Sequence 1:NP_001284936.1 Gene:Spt6 / 44000 FlyBaseID:FBgn0028982 Length:1831 Species:Drosophila melanogaster
Sequence 2:XP_021336424.1 Gene:srbd1 / 100320270 ZFINID:ZDB-GENE-081107-19 Length:982 Species:Danio rerio


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spt6NP_001284936.1 HTH_44 308..411 CDD:291314
RuvC_resolvase 781..935 CDD:304378
HHH_5 939..1042 CDD:304555
DLD 1057..1159 CDD:291540
S1 1220..1281 CDD:278972
SH2_2 1309..1523 CDD:291307
SH2_Nterm_SPT6_like 1336..1420 CDD:198174
SH2_Cterm_SPT6_like 1429..1524 CDD:198182
srbd1XP_021336424.1 FinO_conjug_rep <45..120 CDD:326555
Pnp 199..977 CDD:333075
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D56990at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.920

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