DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment trbl and mark3b

DIOPT Version :9

Sequence 1:NP_524672.1 Gene:trbl / 43999 FlyBaseID:FBgn0028978 Length:484 Species:Drosophila melanogaster
Sequence 2:XP_009293196.1 Gene:mark3b / 767634 ZFINID:ZDB-GENE-060929-80 Length:834 Species:Danio rerio


Alignment Length:423 Identity:110/423 - (26%)
Similarity:172/423 - (40%) Gaps:81/423 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   106 QRYLISAQPSHIS--------------------AAVAAKTP--ASYRHLVDLTASNLRCV----D 144
            :|:.|:...||..                    |:.|.:.|  .:||.|..:...|...|    .
Zfish    31 KRHRITIHTSHTDGRNEVASRPGRSGARCRNSIASCADEQPHIGNYRLLKTIGKGNFAKVKLARH 95

  Fly   145 IFTGEQFLCRIVNEPLHKVQRAYFQLQQHDEELRRSTIYGHPLIRPVHDIIPLTKDRTYILIAPV 209
            |.||.:...:|::    |.|.....||:...|:|...|..||.|..:.::|  ..|:|..|:...
Zfish    96 ILTGREVAIKIID----KTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVI--ETDKTLYLVMEY 154

  Fly   210 PQERDSTGGVTGVYENLHTYIRHAKRLCETEARAIFHQICQTVQVCHRNGIILRDLKLKRFYFID 274
                 ::||  .|::.|   :.|. |:.|.||||.|.||...||.||:..|:.||||.:......
Zfish   155 -----ASGG--EVFDYL---VAHG-RMKEKEARAKFRQIVSAVQYCHQKHIVHRDLKAENLLLDA 208

  Fly   275 EARTKLQYESLEGSMILDGEDDTLSDKIGCPLYTAPELLCPQQTYKGKPADMWSLGVILYTMLVG 339
            :...|:..........:..:.||.   .|.|.|.||||. ..:.|.|...|:|||||||||::.|
Zfish   209 DMNIKIADFGFSNEFTIGNKLDTF---CGSPPYAAPELF-QGKKYDGPEVDVWSLGVILYTLVSG 269

  Fly   340 QYPFYEKANCNLITVIRHGNVQIPLTLSKSVRWLLLSLLRKDYTERMTASHIFLTPWL------R 398
            ..||..:....|...:..|..:||..:|.....||...|..:..:|.|...|....|:      .
Zfish   270 SLPFDGQNLKELRERVLRGKYRIPFYMSTDCENLLKRFLVLNPVKRGTLEQIMKDRWINAGCEEE 334

  Fly   399 EQRPFHMYLPVDVEVAEDWSDAEEDEGTAADAM-------DDDEEGLCPLGDKHEYEDIGVEPLD 456
            |.:||       ||...|.||.:.     .|.|       ::..|.|    .:.:|::|....|.
Zfish   335 ELKPF-------VEPELDISDQKR-----IDIMVGMGYSREEIHESL----TRMKYDEITATYLL 383

  Fly   457 YTRSTLQM----AQNANGLS-TEPEPDTDVDMG 484
            ..|.:.::    :.:::.|| .:..|:::.:.|
Zfish   384 LGRKSTELEVSDSSSSSNLSLAKARPNSEHNNG 416

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
trblNP_524672.1 PKc_like 131..397 CDD:328722 80/269 (30%)
mark3bXP_009293196.1 STKc_MARK 75..327 CDD:270974 82/272 (30%)
S_TKc 76..327 CDD:214567 82/271 (30%)
UBA_MARK3_4 345..387 CDD:270590 10/50 (20%)
MARK1-3_C 735..832 CDD:213381
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.