DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sdic1 and PAC11

DIOPT Version :9

Sequence 1:NP_524670.2 Gene:Sdic1 / 43984 FlyBaseID:FBgn0067861 Length:517 Species:Drosophila melanogaster
Sequence 2:NP_010776.1 Gene:PAC11 / 852099 SGDID:S000002896 Length:533 Species:Saccharomyces cerevisiae


Alignment Length:540 Identity:108/540 - (20%)
Similarity:189/540 - (35%) Gaps:156/540 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 STYSTLSGGKKQPLNLSVYNVQATNIPPKETLVYTKQTQT--------------TSTGGGNGDVL 61
            |..:.:..|.|      :...|:..:..||.:.|.|..||              |:|     |.:
Yeast    50 SVQTDMEEGSK------IQEPQSAYLRRKEVITYDKGIQTDQIEEEQLQENENHTTT-----DAV 103

  Fly    62 AFDAQGDDEESSLQNLGNGFTSKLPPGYLTHGLPTVKDVAPAITPLEIKK-ETEVKKEVNELSEE 125
            |.:....||.:..:...:....:|...:|      |::.|..::.....: ||||.....:....
Yeast   104 AIETTAADENNKDKAENDQPRLELAKPFL------VEEAAATLSNASFARLETEVSASGQQAPSN 162

  Fly   126 QKQMIILSENFQRFVVRAGRVIERALSENVDIYTD-------YIGG-------------GDSEEA 170
            .:|.   .:|..::         ..:|||:...||       |..|             .|.:.|
Yeast   163 MQQD---KDNLMQW---------NMVSENLQSETDCDCIAQEYDPGKGVLVVVYLRLPPADLQYA 215

  Fly   171 NDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVGSYHNNEESPNEPDGVVMVWNTKFK 235
            :.|.:.:  .:|.|..|....:|..:..|                           |....|:..
Yeast   216 SSEAAWS--VVNVVKCDNASGRNGLLIDM---------------------------VEFRGTRIM 251

  Fly   236 KSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTP-------IQRTPLSAAA 293
            .:|....:|.:|.|:|          ||..|.:|:|:|::.|::::.|       :||..::...
Yeast   252 TATILRRYHPESNVIS----------ILLATLTGKIILYELRLKQKKPETPVVYVVQRNMVARHY 306

  Fly   294 HTHPVYC-LQMVGTQNAHNVISISSDGKLCSWS---LDMLSQPQ---------------DT---L 336
            ..|||.. ::....|:...|:..:.:|.:...|   |.:|.:||               ||   .
Yeast   307 FQHPVVAVIETSSVQDQERVLVAADNGNIMELSCLDLTVLRKPQQLRPVPLSQLLSLENDTCTYT 371

  Fly   337 ELQQRQSK--AIAITSMAFPANEINSLVMGSEDGYVY------------SASRHGLRSGVNEVYE 387
            |..||.:|  .:.|..||:.:.:...:.:|.|||.:|            |...:|.:..     |
Yeast   372 ERLQRLAKFDEVGIACMAYTSEDPQYVWIGGEDGGIYKVFWDQPGPLYLSLDNNGFQPA-----E 431

  Fly   388 RHLGPITGISTHYNQLSPDFGHLFLTSSIDWTIKLWSLKDTKPLYSFEQYIAWSPVRRQRPPGPD 452
            .|...:||:..|::......  |.|:.|.|||::||..:..|.:.. ...:...||.|.|  ..:
Yeast   432 NHSTRVTGLEFHWDDARRLM--LLLSCSTDWTVRLWDARAGKAIIG-APLLLGGPVLRAR--WLE 491

  Fly   453 KTQPRHGAPALRRDSWTPSG 472
            |......:..||...|...|
Yeast   492 KNNGGENSRTLRCQVWCADG 511

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sdic1NP_524670.2 Dynein_IC2 23..51 CDD:288403 7/41 (17%)
NtpH 108..>178 CDD:225368 16/90 (18%)
WD40 196..>445 CDD:295369 61/291 (21%)
WD40 <196..442 CDD:225201 59/288 (20%)
WD40 repeat 196..245 CDD:293791 4/48 (8%)
WD40 repeat 251..289 CDD:293791 11/44 (25%)
WD40 repeat 298..337 CDD:293791 11/60 (18%)
WD40 repeat 349..386 CDD:293791 9/48 (19%)
WD40 repeat 393..435 CDD:293791 12/41 (29%)
PAC11NP_010776.1 WD40 <433..466 CDD:395323 11/34 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_101571
Panther 1 1.100 - - O PTHR12442
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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