DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sdic1 and dync2i2

DIOPT Version :9

Sequence 1:NP_524670.2 Gene:Sdic1 / 43984 FlyBaseID:FBgn0067861 Length:517 Species:Drosophila melanogaster
Sequence 2:NP_001099160.1 Gene:dync2i2 / 794361 ZFINID:ZDB-GENE-070928-9 Length:501 Species:Danio rerio


Alignment Length:472 Identity:106/472 - (22%)
Similarity:187/472 - (39%) Gaps:84/472 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   112 ETEVK-KEVNE----LSEEQKQMIILSENFQ------RFVVRAGRVIERALSENVDIYTDYIGGG 165
            |||.: |:|:|    ..::..|.:.|..:..      .|:.||..|:.|.|.:|...:     ..
Zfish    38 ETETQAKDVSENGTQTQDQSGQTLSLDRDLTDFPGLLDFMRRAEDVVIRELVKNSKSH-----AF 97

  Fly   166 DSEEANDERSHARLS-LNRVFYDERWSKNRCITSMDWSTHFPELVVGSYHNNEESPNEPDGVVMV 229
            |..|.|.|..:..:| :.|:.:.:...|:..:||:.|:.....:..|....::...:.....|..
Zfish    98 DGFEVNWEEQNESVSCMYRLQHVDAQEKSLQVTSVSWNCTGSVIACGFGRVDDGDWSNEKACVCT 162

  Fly   230 WNT---KFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSA 291
            ||.   ......|:.:....:.||..||....|:::.||.|||::|:||....:...:.:|.:||
Zfish   163 WNVDRQNLNPKRPDVIIDVATPVMCLCFHPVRPSVVAGGLYSGEVVVWDTSRSQDLILAQTGMSA 227

  Fly   292 AAHTHPVYCLQMV--GTQNAHNVISISSDGKLCSWSLD------MLS---------QPQDTLELQ 339
            ..|..|||.:..|  ..:...:|:|..|.|::..|::|      :||         .||.....:
Zfish   228 DTHREPVYQINWVPGARRGEFSVLSAGSGGRVLLWTIDGSEAKLLLSSGYALVRQQMPQSGAASK 292

  Fly   340 QRQSKAIAITSMAFPANEINSLVMGSEDGYVYSASRHG--------------LRSGVNEVYERHL 390
            .|.|..|.:|::|....::::.::|||.|.|...|...              ||:.:...:....
Zfish   293 TRGSLTIGVTAVALSPWDLDTFLVGSEGGLVLKCSFSSETAAAVPSDGESVILRAPMQFSFSPRG 357

  Fly   391 GPITGISTHYNQLSPDFGHLFLTSSIDWTIKLWSLKDTKPLYSF---EQY---IAWSPV------ 443
            |||.  |.|:   ||...:||::...|....|.|:....||.:.   :.|   :.|||.      
Zfish   358 GPIH--SVHF---SPFHRNLFVSVGTDGLAHLHSVLQPCPLLALRVSDSYVFGVRWSPTRPLVFA 417

  Fly   444 --------------RRQRPPGPDKTQPRHGAPA--LRRDSWTPSGLCIGDEAGKLYVYDVAENLA 492
                          ||...|.....|...|.||  |..:....:.|.:|:..|.:.::.::..|.
Zfish   418 AVTGQGLVQMFDLGRRSLRPVATIDQNAGGQPAYCLEFNPKHTNLLAVGNADGSVNIWQLSAELT 482

  Fly   493 QPSRDEWSRFNTHLSEI 509
            :....|.:......:|:
Zfish   483 EQGAKETAMLEQLANEV 499

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sdic1NP_524670.2 Dynein_IC2 23..51 CDD:288403
NtpH 108..>178 CDD:225368 19/76 (25%)
WD40 196..>445 CDD:295369 70/308 (23%)
WD40 <196..442 CDD:225201 68/285 (24%)
WD40 repeat 196..245 CDD:293791 8/51 (16%)
WD40 repeat 251..289 CDD:293791 12/37 (32%)
WD40 repeat 298..337 CDD:293791 13/55 (24%)
WD40 repeat 349..386 CDD:293791 10/50 (20%)
WD40 repeat 393..435 CDD:293791 12/44 (27%)
dync2i2NP_001099160.1 WD40 66..481 CDD:225201 95/424 (22%)
WD40 repeat 130..180 CDD:293791 8/49 (16%)
WD40 repeat 187..229 CDD:293791 14/41 (34%)
WD40 repeat 235..296 CDD:293791 13/60 (22%)
WD40 repeat 301..338 CDD:293791 8/36 (22%)
WD40 repeat 361..399 CDD:293791 11/42 (26%)
WD40 repeat 403..442 CDD:293791 6/38 (16%)
WD40 repeat 450..477 CDD:293791 5/26 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1587
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1453532at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.820

Return to query results.
Submit another query.