DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sdic1 and dync1i1

DIOPT Version :9

Sequence 1:NP_524670.2 Gene:Sdic1 / 43984 FlyBaseID:FBgn0067861 Length:517 Species:Drosophila melanogaster
Sequence 2:XP_009290517.1 Gene:dync1i1 / 561525 ZFINID:ZDB-GENE-061215-62 Length:647 Species:Danio rerio


Alignment Length:534 Identity:250/534 - (46%)
Similarity:339/534 - (63%) Gaps:71/534 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 TLSGGKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDVLAFDAQGDDEESSLQNLGN 79
            ::.|.:.|.|..|  .:...:..|||.:.|:|:|||......       ..:.||||.|      
Zfish   141 SVHGCRMQRLGAS--KIVQIDFMPKELVTYSKETQTPVASNQ-------PEEEDDEELS------ 190

  Fly    80 GFTSKLPPGYLTHGLPTVKDVAPAITPLEIKKETEVKKEVN--ELSEEQKQMIILSENFQRFVVR 142
                             |....||...||.:|..|| :||:  ||:.|:|:.|:.||:|..|..|
Zfish   191 -----------------VPKSEPASQQLEEEKTQEV-EEVHPRELTNEEKEQIVHSEDFLFFFDR 237

  Fly   143 AGRVIERALSENVDIYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPE 207
            :.||:||.|:|:.||:.||.|....::..|.::.:.||.||.||||.|||:|.:||:|||..:||
Zfish   238 SIRVVERVLAEDKDIFFDYSGRDMEDKEGDLQAGSNLSFNRHFYDEHWSKHRVVTSLDWSPQYPE 302

  Fly   208 LVVGSYHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIV 272
            |:|.||:.||::|:||||||:|||.||||:|||.:|||||:|||..||:|:|||::||||||||.
Zfish   303 LLVASYNTNEDAPHEPDGVVLVWNMKFKKATPEYIFHCQSSVMSVGFAQFHPNLVIGGTYSGQIA 367

  Fly   273 LWDNRVQKRTPIQRTPLSAAAHTHPVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLE 337
            :||||..:|||:|||||||.||||||||:.:||||||:|:|::|:|||:||||||||||||:::|
Zfish   368 MWDNRSHRRTPVQRTPLSATAHTHPVYCVNVVGTQNANNLITVSTDGKMCSWSLDMLSQPQESME 432

  Fly   338 LQQRQSKAIAITSMAFPANEINSLVMGSEDGYVYSASRHGLRSGVNEVYERHLGPITGISTHYNQ 402
            |...:||.:|:|.|||||:::|:.|:|||:|.||:|||||.::|:.|:::.|.||:||||.| |.
Zfish   433 LIYNKSKPVAVTCMAFPASDVNNYVVGSEEGTVYTASRHGSKAGIGEIFDGHQGPVTGISCH-NA 496

  Fly   403 LSP-DFGHLFLTSSIDWTIKLWSLKDTKPLYSFEQY------IAWSPVRRQRPPG---------- 450
            :.| ||.|||.|||.|||:||||.|..|||||||..      :.||||.    |.          
Zfish   497 VGPVDFSHLFTTSSFDWTVKLWSTKHNKPLYSFEDNADYVYDVMWSPVH----PALFATVDGNGR 557

  Fly   451 ------------PDKTQPRHGAPALRRDSWTPSG--LCIGDEAGKLYVYDVAENLAQPSRDEWSR 501
                        |..:....|..||.|..|...|  :.:||..|::::|||.|.||.|..|:||:
Zfish   558 LDLWNLNNYTEVPSASVSVEGGCALNRVRWASGGREVAVGDSEGRVWIYDVGEQLAVPHTDDWSK 622

  Fly   502 FNTHLSEIKMNQGD 515
            |...|.||:.|:||
Zfish   623 FGRTLMEIQANRGD 636

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sdic1NP_524670.2 Dynein_IC2 23..51 CDD:288403 9/27 (33%)
NtpH 108..>178 CDD:225368 28/71 (39%)
WD40 196..>445 CDD:295369 161/255 (63%)
WD40 <196..442 CDD:225201 158/252 (63%)
WD40 repeat 196..245 CDD:293791 31/48 (65%)
WD40 repeat 251..289 CDD:293791 25/37 (68%)
WD40 repeat 298..337 CDD:293791 27/38 (71%)
WD40 repeat 349..386 CDD:293791 21/36 (58%)
WD40 repeat 393..435 CDD:293791 28/42 (67%)
dync1i1XP_009290517.1 Dynein_IC2 147..175 CDD:288403 10/29 (34%)
WD40 215..608 CDD:225201 207/397 (52%)
WD40 284..607 CDD:295369 176/327 (54%)
WD40 repeat 292..337 CDD:293791 30/44 (68%)
WD40 repeat 347..388 CDD:293791 28/40 (70%)
WD40 repeat 394..437 CDD:293791 28/42 (67%)
WD40 repeat 443..490 CDD:293791 24/46 (52%)
WD40 repeat 498..530 CDD:293791 22/31 (71%)
WD40 repeat 536..574 CDD:293791 6/41 (15%)
WD40 repeat 582..608 CDD:293791 8/25 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170573319
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1587
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 624 1.000 Inparanoid score I842
OMA 1 1.010 - - QHG54336
OrthoDB 1 1.010 - - D1453532at2759
OrthoFinder 1 1.000 - - FOG0001314
OrthoInspector 1 1.000 - - mtm6471
orthoMCL 1 0.900 - - OOG6_101571
Panther 1 1.100 - - O PTHR12442
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X812
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1312.770

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