DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sdic1 and dnai1.2

DIOPT Version :9

Sequence 1:NP_524670.2 Gene:Sdic1 / 43984 FlyBaseID:FBgn0067861 Length:517 Species:Drosophila melanogaster
Sequence 2:NP_001074027.1 Gene:dnai1.2 / 555705 ZFINID:ZDB-GENE-070112-1302 Length:660 Species:Danio rerio


Alignment Length:413 Identity:97/413 - (23%)
Similarity:185/413 - (44%) Gaps:74/413 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   108 EIKKETEVKKEVNELSEEQKQMIILSENFQRFV---VRAGRVIERALSENV--DIYTDYIGGGDS 167
            |..||.:..:..|:..:..|:.:|.:|.....:   .:...:|||.:::|:  ::..|::   ..
Zfish   214 EKSKEKQESQFPNKEEDRSKKKMIQAEAQSDDISQLAKPAEIIERMVNQNIFDEVAQDFM---YF 275

  Fly   168 EEANDE---RSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELV---VGSYHNNEESPNEPDGV 226
            |:|.||   .....|.|.:..||:  :|...:|::.|:..:.:|.   :|||    |...:..|:
Zfish   276 EDAADEFRGEKGTLLPLWKFQYDK--AKGLSVTALCWNHIYSDLFAVGLGSY----EFTQQERGM 334

  Fly   227 VMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSA 291
            ::.:..| ..|.||.:|:..|.||.....:....|:..|.|.|.:.::|.|.:...|:..:..|:
Zfish   335 LLFYTLK-NPSFPEFIFNTDSGVMCVDIHEQLSYLVAVGLYDGCVSVYDLRKKSDQPMYNSIASS 398

  Fly   292 AAHTHPVYCL--QMVGTQNAHNVISISSDGKLCSWSL--------DMLS-QPQDTLELQQRQSKA 345
            ..||..|:.:  |.....:.||..|:|:||::.||:|        |::. .|.|.:....:...|
Zfish   399 GKHTGAVWQVKWQKDDLDSNHNFFSVSTDGRVVSWTLVKHEIVFTDIIKLPPVDKVPDDLKNVVA 463

  Fly   346 IAITSMAFPANEINSLVMGSEDGYVYSASRHGLRSGVNEVYERHLGPITGISTHYNQLSPDFGHL 410
            .|.||:.|...:.:..::|:|.|.::..|:: ..|...|:|:.|.  :|.....:|...|   ::
Zfish   464 TAGTSLDFHKQKDHHFLVGTEAGKIHKGSKY-YSSKFLEMYDAHF--MTVSCVRWNPFHP---NV 522

  Fly   411 FLTSSIDWTIKLWSLKDTKPLYSFE-----QYIAWSPVRRQRPPGPDKTQPRHGA---PALRRDS 467
            |::...||.:|:|......|:::||     ..:||||               |.:   .|:..| 
Zfish   523 FISCGWDWMVKIWDHTINSPVFTFELKSSVTDVAWSP---------------HSSTVFAAVTAD- 571

  Fly   468 WTPSGLCIGDEAGKLYVYDVAEN 490
                        ||::|:|::.|
Zfish   572 ------------GKVHVFDLSIN 582

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sdic1NP_524670.2 Dynein_IC2 23..51 CDD:288403
NtpH 108..>178 CDD:225368 16/77 (21%)
WD40 196..>445 CDD:295369 68/267 (25%)
WD40 <196..442 CDD:225201 66/264 (25%)
WD40 repeat 196..245 CDD:293791 13/51 (25%)
WD40 repeat 251..289 CDD:293791 7/37 (19%)
WD40 repeat 298..337 CDD:293791 14/49 (29%)
WD40 repeat 349..386 CDD:293791 9/36 (25%)
WD40 repeat 393..435 CDD:293791 9/41 (22%)
dnai1.2NP_001074027.1 WD40 <296..650 CDD:225201 79/328 (24%)
WD40 354..620 CDD:295369 63/263 (24%)
WD40 repeat 357..397 CDD:293791 8/39 (21%)
WD40 repeat 405..485 CDD:293791 20/79 (25%)
WD40 repeat 511..547 CDD:293791 8/38 (21%)
WD40 repeat 552..591 CDD:293791 12/59 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1587
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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