DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sdic1 and dnai4

DIOPT Version :9

Sequence 1:NP_524670.2 Gene:Sdic1 / 43984 FlyBaseID:FBgn0067861 Length:517 Species:Drosophila melanogaster
Sequence 2:NP_001018595.1 Gene:dnai4 / 553797 ZFINID:ZDB-GENE-050522-322 Length:778 Species:Danio rerio


Alignment Length:645 Identity:141/645 - (21%)
Similarity:236/645 - (36%) Gaps:190/645 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 FLRSTYSTLSGGK-----------------KQPLNLSVYNVQATNIPPKETL----------VYT 45
            |.||.:.:.|..:                 ||.|:.|:.::|:....|||.|          .|.
Zfish   129 FTRSFFGSASASRISQTAESVTDETKDLLVKQDLSNSISDIQSHREEPKEQLRENILDSTANCYL 193

  Fly    46 KQTQTTSTGGGNGDVLAFDAQGDDEES-SLQNLGNGFTS--KLPPG---YLTHGLPTVKDVAPAI 104
            .:|:|...    .|:.|.....:.|:: :::...|.:|.  |...|   |:...:.|..| ||..
Zfish   194 SETETIWL----LDIPAVSVSLESEDAEAVKERNNAYTELCKNRQGNDKYVERSMQTFSD-APKT 253

  Fly   105 TPLEIKKETEVKKEV-----------NELSEEQKQMIILSENFQRFVVRA---GRVI-----ERA 150
            ..::....|.|.|.|           |.:|:.....::.||..:..:..:   |.::     .::
Zfish   254 KEVQCDSITMVDKAVMCTVWDMYDSFNNISDVSANTVVSSERHEATIPESSPEGHLVHPKRSNQS 318

  Fly   151 LSENVDIYTDYIGGGDS------------EEAN------------DERSHARLSLNRVFY----- 186
            ||....:.|  :.|..:            ||.:            |.....|:.|..||.     
Zfish   319 LSVVSTVST--VSGSSTHIEKMACVLPLDEEPDLQLILQSDKLKQDLALMERVVLANVFQPKLAA 381

  Fly   187 ------------------DERW---SKN-------------------RCITSMDWSTHFPELVVG 211
                              :|.|   |||                   |.:|.|.|:...|:|:..
Zfish   382 YRQLPIIEDPDCVQMVMEEESWTEQSKNSHCPFLERLWDFSCELTMGRNVTCMVWNKKNPDLLAV 446

  Fly   212 SYHNNE-ESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWD 275
            .|...| ::||  .|:|..|:.| ..:.|:.||:|:|.|.:..|:..|.|.:..|.|.|.|.:::
Zfish   447 GYGQVEFKNPN--SGLVCCWSLK-NPTWPDRVFYCESGVTALDFSASNANQLAVGMYDGTIAIYN 508

  Fly   276 NRVQKRTPIQRTPLSAAAHTHPVYCLQMV------GTQNAHNVISISSDGKLCSW-------SLD 327
            .:..::|||..:...|..||.||:.|..:      .......::|:||||::..|       .:|
Zfish   509 VQTSEQTPITDSSDCANLHTSPVWQLTWIDHEDGLAADKGEILVSVSSDGRISKWIHYKSMECVD 573

  Fly   328 MLSQPQDTLELQQRQSKAIAITSMAFPANEINSLVMGSEDGYVYSASRHGLRSGVNE----VYER 388
            ::......|:.:|..|.........|..|:....::|:|:|:::..|     |..||    .|:.
Zfish   574 LMKLKIHDLQWKQHISSLTPGMCFDFHPNDSKIYLVGTEEGHIHKCS-----SSYNEQYLDSYKA 633

  Fly   389 HLGPITGISTHYNQLSPDFGHLFLTSSIDWTIKLWSLKDTKPLYSFEQ------YIAWSP----- 442
            |..|:..::     .||....:||:.|.||||:||......|:..|..      .|.|||     
Zfish   634 HKRPVYKVT-----WSPFCSDVFLSCSSDWTIQLWRQDLQIPVMGFTSGQRVVFDIMWSPHCATV 693

  Fly   443 ---------------VRRQRPPGPDKTQPRHGAPALRRDSWTPSGLC--IGDEAGKLYVY 485
                           |....|...:.|.|.....||   .::|...|  :||..|::.||
Zfish   694 FGAVSEGKVEIWDLRVSSLDPTLVNWTSPGVNPTAL---LFSPETDCVLVGDSEGQVTVY 750

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sdic1NP_524670.2 Dynein_IC2 23..51 CDD:288403 9/37 (24%)
NtpH 108..>178 CDD:225368 16/112 (14%)
WD40 196..>445 CDD:295369 75/292 (26%)
WD40 <196..442 CDD:225201 72/269 (27%)
WD40 repeat 196..245 CDD:293791 16/49 (33%)
WD40 repeat 251..289 CDD:293791 10/37 (27%)
WD40 repeat 298..337 CDD:293791 9/51 (18%)
WD40 repeat 349..386 CDD:293791 9/40 (23%)
WD40 repeat 393..435 CDD:293791 12/41 (29%)
dnai4NP_001018595.1 WD40 repeat 431..473 CDD:293791 13/44 (30%)
WD40 <459..754 CDD:225201 78/306 (25%)
WD 1. /evidence=ECO:0000255 477..517 11/39 (28%)
WD40 479..751 CDD:295369 70/285 (25%)
WD40 repeat 483..526 CDD:293791 11/42 (26%)
WD 2. /evidence=ECO:0000255 526..573 11/46 (24%)
WD40 repeat 531..576 CDD:293791 9/44 (20%)
WD 3. /evidence=ECO:0000255 586..629 11/47 (23%)
WD40 repeat 589..624 CDD:293791 8/39 (21%)
WD 4. /evidence=ECO:0000255 633..673 14/44 (32%)
WD40 repeat 638..675 CDD:293791 12/41 (29%)
WD 5. /evidence=ECO:0000255 676..715 5/38 (13%)
WD40 repeat 681..707 CDD:293791 4/25 (16%)
WD 6. /evidence=ECO:0000255 721..760 10/33 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1587
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54336
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.820

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