DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sdic1 and Dnai1

DIOPT Version :9

Sequence 1:NP_524670.2 Gene:Sdic1 / 43984 FlyBaseID:FBgn0067861 Length:517 Species:Drosophila melanogaster
Sequence 2:NP_001019513.1 Gene:Dnai1 / 500442 RGDID:1565671 Length:705 Species:Rattus norvegicus


Alignment Length:419 Identity:96/419 - (22%)
Similarity:188/419 - (44%) Gaps:66/419 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    94 LPTVKDVAPAITPLEIKKETEVKKEVNELSEEQKQMIILSENFQRFVVRAGRVIERALSENV--D 156
            |...|:.....||  :.|:|| |..:.:|:..:.|    |::..: |.:|.:::||.:::|.  |
  Rat   246 LEKTKEKEKTKTP--VAKKTE-KMAMRKLTSMESQ----SDDITK-VTQAAKIVERMVNQNTYDD 302

  Fly   157 IYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPEL-VVGSYHNNEESP 220
            :..|:....|:.:...::....|.|.:...|:  :|...:|::.|:..:.:| .||  |.:.:..
  Rat   303 VAQDFKYYEDAADEYRDQEGTLLPLWKFQNDK--AKRLAVTALCWNPKYKDLFAVG--HGSYDFM 363

  Fly   221 NEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQ 285
            .:..|::::::.| ..|.||.:|..:|.:|.......:|.|::.|.|.|.:.:::.:.....|..
  Rat   364 KQSRGMLLLYSMK-NPSFPEYMFSSESGIMCLDMHMDHPYLVVVGYYDGNVAIYNLKKPHSQPCF 427

  Fly   286 RTPLSAAAHTHPVYCLQMVGTQNAHNV--ISISSDGKLCSWSL--------DM--LSQPQDTLEL 338
            |:...:..||.||:.::.......||:  .|:||||::.||:|        |:  |.....|.|:
  Rat   428 RSTSKSGKHTDPVWQVKWQKDDMDHNLNFFSVSSDGRIVSWTLVKSELVHIDVIKLKDEGSTTEI 492

  Fly   339 QQRQSKAIAITSMAFPAN-EINSL-VMGSEDGYVYSASRHGLRSGVNEVYERHLGPITGISTHYN 401
            .:...........||..: ||:.| ::|:|:|.:|..|: ...|...:.|:.|...:..:     
  Rat   493 PEGLQLHTVGCGTAFDFHKEIDYLFLVGTEEGKIYKCSK-SYSSQFLDTYDAHNMAVDAV----- 551

  Fly   402 QLSPDFGHLFLTSSIDWTIKLWSLKDTKPLYSFEQY-----IAWSPVRRQRPPGPDKTQPRHGAP 461
            ..:|....:|::.|.|||:|:|......|::.::..     :||:|.                  
  Rat   552 LWNPYHARVFISCSSDWTVKIWDHAIKTPMFIYDLNAAVGDVAWAPY------------------ 598

  Fly   462 ALRRDSWTPSGLCIGDEAGKLYVYDVAEN 490
                 |.|.......|  ||.:|:|:|.|
  Rat   599 -----SSTVFAAVTTD--GKAHVFDLAVN 620

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sdic1NP_524670.2 Dynein_IC2 23..51 CDD:288403
NtpH 108..>178 CDD:225368 15/71 (21%)
WD40 196..>445 CDD:295369 64/268 (24%)
WD40 <196..442 CDD:225201 63/265 (24%)
WD40 repeat 196..245 CDD:293791 12/49 (24%)
WD40 repeat 251..289 CDD:293791 7/37 (19%)
WD40 repeat 298..337 CDD:293791 14/50 (28%)
WD40 repeat 349..386 CDD:293791 11/38 (29%)
WD40 repeat 393..435 CDD:293791 9/41 (22%)
Dnai1NP_001019513.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..44
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 122..169
WD40 325..683 CDD:225201 77/332 (23%)
WD40 repeat 340..386 CDD:293791 11/48 (23%)
WD40 <358..616 CDD:295369 64/289 (22%)
WD 1 386..426 7/39 (18%)
WD40 repeat 392..433 CDD:293791 8/40 (20%)
WD 2 435..478 14/42 (33%)
WD40 repeat 440..494 CDD:293791 15/53 (28%)
WD40 repeat 505..542 CDD:293791 11/37 (30%)
WD 3 543..583 10/44 (23%)
WD40 repeat 548..587 CDD:293791 9/43 (21%)
WD 4 585..625 12/61 (20%)
WD40 repeat 590..631 CDD:293791 12/56 (21%)
WD 5 633..672
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1587
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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