DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sdic1 and dync2i2

DIOPT Version :9

Sequence 1:NP_524670.2 Gene:Sdic1 / 43984 FlyBaseID:FBgn0067861 Length:517 Species:Drosophila melanogaster
Sequence 2:XP_012823678.1 Gene:dync2i2 / 448417 XenbaseID:XB-GENE-953027 Length:503 Species:Xenopus tropicalis


Alignment Length:429 Identity:96/429 - (22%)
Similarity:174/429 - (40%) Gaps:96/429 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   121 ELSEEQKQM------IILSENFQRFVVRAGRVIERALSENVDIYTDYIGGGDSEEANDERSHARL 179
            ||:..|:.:      ::...:..:|:.|...::.:.|::|...:     ..|..|.|.|..|.::
 Frog    54 ELNANQRTLDVDLGPLLDYPDLGQFLKRVEGIMIKELNKNWKSH-----AFDGYEVNWEEQHEQV 113

  Fly   180 S-LNRVFYDERWSKNRCITSMDWSTHFPELVVGSY-------HNNEESPNEPDGVVMVWNTK--- 233
            : |:.:.|.:...:...:||:.|:: ...::..||       .:.|:|      .|..||..   
 Frog   114 TCLHSLQYPDALEQQLQVTSVSWNS-TGSIIACSYGRFGDGDWSTEKS------YVCTWNLDRRG 171

  Fly   234 FKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKRTPIQRTPLSAAAHTHPV 298
            |..:.|:.|....|:||...:....|:||.||.::|.:::||........|.||......||..|
 Frog   172 FNANNPDTVLDVPSSVMCLAWHPSQPSLIAGGLFNGDVLVWDTSRTDDPLIGRTGHVGDTHTDAV 236

  Fly   299 Y---CLQMVGTQNAHNVISISSDGKLCSWSLD------------MLSQ--PQDT-LELQQRQSKA 345
            |   .:|.....:.|.|.|:|||||:..|.::            :::|  |.:| :....|...|
 Frog   237 YQVGWMQEKSQGHRHQVFSVSSDGKILVWQMEKEGHLVLLDGFALVAQQIPSNTKIHKPGRGDTA 301

  Fly   346 IAITSMAFPANEINSLVMGSEDGYVYSASRH-------------GLRSGVNEVYERHLGPITGIS 397
            :.:|.:::...:.:..::|.|.||:...|..             .||:.....:..|.||:..::
 Frog   302 VGVTCLSYSHFDPSLFIVGVEGGYLLKCSSSVQTLAPINMGSSVPLRAPAQFTFSPHGGPVYSVT 366

  Fly   398 THYNQLSPDFGHLFLTSSIDWTIKLWSLKDTKPLYSF---EQY---IAWSPVRRQRPPGPDKTQP 456
                 .||...:|||::..|....|:|:...|||.|.   ::|   |.|||||            
 Frog   367 -----CSPFHRNLFLSAGTDGHAHLYSMLQAKPLVSLQLSQKYLFSIRWSPVR------------ 414

  Fly   457 RHGAPALRRDSWTPSGLCIGDEAGKLYVYDVAENLAQPS 495
                         |.........|::.:.|.|::..:||
 Frog   415 -------------PLVFAAASGDGEVVLVDFAKSFQKPS 440

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sdic1NP_524670.2 Dynein_IC2 23..51 CDD:288403
NtpH 108..>178 CDD:225368 12/62 (19%)
WD40 196..>445 CDD:295369 75/295 (25%)
WD40 <196..442 CDD:225201 72/292 (25%)
WD40 repeat 196..245 CDD:293791 13/58 (22%)
WD40 repeat 251..289 CDD:293791 11/37 (30%)
WD40 repeat 298..337 CDD:293791 15/56 (27%)
WD40 repeat 349..386 CDD:293791 8/49 (16%)
WD40 repeat 393..435 CDD:293791 12/44 (27%)
dync2i2XP_012823678.1 WD40 repeat 131..182 CDD:293791 13/57 (23%)
WD40 184..481 CDD:392136 69/287 (24%)
WD40 repeat 188..227 CDD:293791 12/38 (32%)
WD40 repeat 236..297 CDD:293791 15/60 (25%)
WD40 repeat 305..355 CDD:293791 8/49 (16%)
WD40 repeat 362..399 CDD:293791 12/41 (29%)
WD40 repeat 405..446 CDD:293791 12/61 (20%)
WD40 repeat 452..477 CDD:293791
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1453532at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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