DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sdic1 and Sdic2

DIOPT Version :9

Sequence 1:NP_524670.2 Gene:Sdic1 / 43984 FlyBaseID:FBgn0067861 Length:517 Species:Drosophila melanogaster
Sequence 2:NP_001285481.1 Gene:Sdic2 / 2768883 FlyBaseID:FBgn0053497 Length:543 Species:Drosophila melanogaster


Alignment Length:543 Identity:496/543 - (91%)
Similarity:500/543 - (92%) Gaps:26/543 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGLVLIKFLRSTYSTLSGGKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDVLAFDA 65
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Fly     1 MGLVLIKFLRSTYSTLSGGKKQPLNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDVLAFDA 65

  Fly    66 QGDDEESSLQNLGNGFTSKLPPGYLTHGLPTVKDVAPAITPLEIKKETEVKKEVNELSEEQKQMI 130
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Fly    66 QGDDEESSLQNLGNGFTSKLPPGYLTHGLPTVKDVAPAITPLEIKKETEVKKEVNELSEEQKQMI 130

  Fly   131 ILSENFQRFVVRAGRVIERALSENVDIYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRC 195
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Fly   131 ILSENFQRFVVRAGRVIERALSENVDIYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRC 195

  Fly   196 ITSMDWSTHFPELVVGSYHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPN 260
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Fly   196 ITSMDWSTHFPELVVGSYHNNEESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPN 260

  Fly   261 LILGGTYSGQIVLWDNRVQKRTPIQRTPLSAAAHTHPVYCLQMVGTQNAHNVISISSDGKLCSWS 325
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
  Fly   261 LILGGTYSGQIVLWDNRVQKRTPIQRTPLSAAAHTHPVYCLQMVGTQNAHNVISISSDGKLCSWS 325

  Fly   326 LDMLSQPQDTLELQQRQSKAIAITSMAFPANEINSLVMGSEDGYVYSASRHGLRSGVNEVYERHL 390
            |||||||||||||||||||||||||||||||||||:|||||||||||||||||||||||||||||
  Fly   326 LDMLSQPQDTLELQQRQSKAIAITSMAFPANEINSVVMGSEDGYVYSASRHGLRSGVNEVYERHL 390

  Fly   391 GPITGISTHYNQLSPDFGHLFLTSSIDWTIKLWSLKDTKPLYSFEQY------IAWSPVR----- 444
            |||||||||||||||||||||||||||||||||||||||||||||..      :|||||.     
  Fly   391 GPITGISTHYNQLSPDFGHLFLTSSIDWTIKLWSLKDTKPLYSFEDNSDYVMDVAWSPVHPALFA 455

  Fly   445 -------------RQRPPGPDKTQPRHGAPALRRDSWTPSGL--CIGDEAGKLYVYDVAENLAQP 494
                         .|....|..:....|||||.|.|||||||  |||||||||||||||||||||
  Fly   456 AVDGSGRLDLWNLNQDTEVPTASIVVAGAPALNRVSWTPSGLHVCIGDEAGKLYVYDVAENLAQP 520

  Fly   495 SRDEWSRFNTHLSEIKMNQGDEI 517
            |||||||||||||||||||.||:
  Fly   521 SRDEWSRFNTHLSEIKMNQSDEV 543

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sdic1NP_524670.2 Dynein_IC2 23..51 CDD:288403 27/27 (100%)
NtpH 108..>178 CDD:225368 69/69 (100%)
WD40 196..>445 CDD:295369 244/272 (90%)
WD40 <196..442 CDD:225201 241/251 (96%)
WD40 repeat 196..245 CDD:293791 48/48 (100%)
WD40 repeat 251..289 CDD:293791 37/37 (100%)
WD40 repeat 298..337 CDD:293791 38/38 (100%)
WD40 repeat 349..386 CDD:293791 35/36 (97%)
WD40 repeat 393..435 CDD:293791 41/41 (100%)
Sdic2NP_001285481.1 Dynein_IC2 23..51 CDD:288403 27/27 (100%)
NtpH 108..>178 CDD:225368 69/69 (100%)
WD40 196..512 CDD:295369 270/315 (86%)
WD40 repeat 196..245 CDD:293791 48/48 (100%)
WD40 <224..523 CDD:225201 253/298 (85%)
WD40 repeat 251..289 CDD:293791 37/37 (100%)
WD40 repeat 298..337 CDD:293791 38/38 (100%)
WD40 repeat 349..435 CDD:293791 84/85 (99%)
WD40 repeat 441..479 CDD:293791 7/37 (19%)
WD40 repeat 487..513 CDD:293791 21/25 (84%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45439692
Domainoid 1 1.000 50 1.000 Domainoid score I18819
eggNOG 1 0.900 - - E1_KOG1587
Homologene 1 1.000 - - H37921
Inparanoid 1 1.050 624 1.000 Inparanoid score I842
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54336
OrthoDB 1 1.010 - - D1453532at2759
OrthoFinder 1 1.000 - - FOG0001314
OrthoInspector 1 1.000 - - mtm6471
orthoMCL 1 0.900 - - OOG6_101571
Panther 1 1.100 - - P PTHR12442
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X812
1312.810

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