DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sdic1 and dync1i1

DIOPT Version :9

Sequence 1:NP_524670.2 Gene:Sdic1 / 43984 FlyBaseID:FBgn0067861 Length:517 Species:Drosophila melanogaster
Sequence 2:NP_001106382.1 Gene:dync1i1 / 100127187 XenbaseID:XB-GENE-490874 Length:627 Species:Xenopus tropicalis


Alignment Length:525 Identity:246/525 - (46%)
Similarity:335/525 - (63%) Gaps:69/525 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 LNLSVYNVQATNIPPKETLVYTKQTQTTSTGGGNGDVLAFDAQGDDEESSLQNLGNGFTSKLPPG 88
            :.|.|..|...:..|:|.:.|:|:|||        .|.....:.::|:..:.:|.....|:    
 Frog   129 IKLGVSKVTQVDFLPREVVSYSKETQT--------PVTTHQTEEEEEDEEMVDLKTEHDSE---- 181

  Fly    89 YLTHGLPTVKDVAPAITPLEIKKETEVKKEV--NELSEEQKQMIILSENFQRFVVRAGRVIERAL 151
                              .|.::|.:..:||  .||:||:||.:..||.|..|..|..|||||||
 Frog   182 ------------------FENQEEKQDSREVPPRELTEEEKQQVTHSEEFLIFFDRTIRVIERAL 228

  Fly   152 SENVDIYTDYIGGGDSEEANDERSHARLSLNRVFYDERWSKNRCITSMDWSTHFPELVVGSYHNN 216
            :|:.:|:.||.|....::..|.::.|.||.||.||||.|||:|.:|.:|||..:|||:|.||:||
 Frog   229 AEDSNIFFDYSGRDLEDKEGDIQAGANLSFNRQFYDEHWSKHRVVTCLDWSLQYPELMVASYNNN 293

  Fly   217 EESPNEPDGVVMVWNTKFKKSTPEDVFHCQSAVMSTCFAKFNPNLILGGTYSGQIVLWDNRVQKR 281
            |::|:|||||.:|||.||:|:|||.:|||||:|||.|||:|:|||::||||||||||||||..:|
 Frog   294 EDAPHEPDGVALVWNMKFRKTTPEYIFHCQSSVMSVCFARFHPNLVIGGTYSGQIVLWDNRSHRR 358

  Fly   282 TPIQRTPLSAAAHTHPVYCLQMVGTQNAHNVISISSDGKLCSWSLDMLSQPQDTLELQQRQSKAI 346
            ||:|||||||||||||:||:.:||||||||:|::|:|||||||||||||.||:::||...:||.:
 Frog   359 TPVQRTPLSAAAHTHPIYCVNVVGTQNAHNLITVSTDGKLCSWSLDMLSAPQESMELVYNKSKPV 423

  Fly   347 AITSMAFPANEINSLVMGSEDGYVYSASRHGLRSGVNEVYERHLGPITGISTHYNQLSP-DFGHL 410
            |:|.||||..::|:.|:|||:|.||:|.|||.::|::||:|.|.||:|||:.| |.:.| ||.||
 Frog   424 AVTGMAFPTGDVNNFVVGSEEGTVYTACRHGSKAGISEVFEGHQGPVTGINCH-NAVGPIDFSHL 487

  Fly   411 FLTSSIDWTIKLWSLKDTKPLYSFEQY------IAWSPVRRQRPPG------------------- 450
            |||||.|||:|||:.|..|||||||..      :.||||.    |.                   
 Frog   488 FLTSSFDWTVKLWTTKHNKPLYSFEDNADYVCDVTWSPVH----PALFACVDGMGRLDLWNLNND 548

  Fly   451 ---PDKTQPRHGAPALRRDSWTPSG--LCIGDEAGKLYVYDVAENLAQPSRDEWSRFNTHLSEIK 510
               |..:....||.||.|..|..||  :.:||..|::::|||.| .:.|..||||||...|.||:
 Frog   549 TEVPTASTAVEGASALNRVRWAQSGKEVAVGDSEGRVWIYDVGE-FSIPHNDEWSRFARTLMEIR 612

  Fly   511 MNQGD 515
            .|:|:
 Frog   613 ANRGE 617

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sdic1NP_524670.2 Dynein_IC2 23..51 CDD:288403 9/26 (35%)
NtpH 108..>178 CDD:225368 28/71 (39%)
WD40 196..>445 CDD:295369 162/255 (64%)
WD40 <196..442 CDD:225201 159/252 (63%)
WD40 repeat 196..245 CDD:293791 29/48 (60%)
WD40 repeat 251..289 CDD:293791 28/37 (76%)
WD40 repeat 298..337 CDD:293791 27/38 (71%)
WD40 repeat 349..386 CDD:293791 19/36 (53%)
WD40 repeat 393..435 CDD:293791 27/42 (64%)
dync1i1NP_001106382.1 Dynein_IC2 129..156 CDD:288403 10/34 (29%)
WD40 180..598 CDD:225201 222/445 (50%)
BALF1 <221..>276 CDD:115513 27/54 (50%)
WD40 266..589 CDD:295369 179/327 (55%)
WD40 repeat 274..319 CDD:293791 28/44 (64%)
WD40 repeat 329..368 CDD:293791 29/38 (76%)
WD40 repeat 376..419 CDD:293791 29/42 (69%)
WD40 repeat 425..464 CDD:293791 20/38 (53%)
WD40 repeat 480..512 CDD:293791 22/31 (71%)
WD40 repeat 518..556 CDD:293791 6/41 (15%)
WD40 repeat 564..590 CDD:293791 9/25 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 376 1.000 Domainoid score I857
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 613 1.000 Inparanoid score I890
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1453532at2759
OrthoFinder 1 1.000 - - FOG0001314
OrthoInspector 1 1.000 - - mtm9426
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X812
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
77.060

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