DRSC/TRiP Functional Genomics Resources

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Protein Alignment Oamb and htr1ab

DIOPT Version :10

Sequence 1:NP_001262774.1 Gene:Oamb / 43982 FlyBaseID:FBgn0024944 Length:751 Species:Drosophila melanogaster
Sequence 2:NP_001139238.1 Gene:htr1ab / 797538 ZFINID:ZDB-GENE-090409-2 Length:403 Species:Danio rerio


Alignment Length:576 Identity:152/576 - (26%)
Similarity:216/576 - (37%) Gaps:215/576 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 ISLAVLEFINVLV---IGGNCLVIAAVFCSNKLRSVTNFFIVNLAVADLLVGLAVLPFSATWEVF 83
            ||.::|  |..|:   |.||..|:||:.....|::|.|:.|.:|||.||:|.:.|||.:|.::|.
Zfish    36 ISTSLL--IGALILCSIFGNACVVAAIALERSLQNVANYLIGSLAVTDLMVSVLVLPMAALYQVL 98

  Fly    84 KVWIFGDLWCRIWLAVDVWMCTASILNLCAISLDRYVAVTRPVTYPSIMSTKKAKSLIAGIWVLS 148
            ..|..|.:.|.|::::|:..||:|||:||||:||||.|:|.|:.|....:.|:|..||...|.:.
Zfish    99 DKWTLGQVTCDIFISLDILCCTSSILHLCAIALDRYWAITDPIDYMKKRTLKRAALLITVTWFVG 163

  Fly   149 FFICFPPLVGWKDQKAVIQPTYPKGNHTLYYTTTMSSSEDGQLGLDSIKDQGEASLPPSPPHIGN 213
            |.|..||::..|.|                                                   
Zfish   164 FSISIPPMLIMKSQ--------------------------------------------------- 177

  Fly   214 GNAYNPYDPGFAPIDGSAEIRIAAIDSTSTSTTATTTTTASSSSTTETEMDLDLLNAPPQNRPQT 278
                                                                          |:|
Zfish   178 --------------------------------------------------------------PKT 180

  Fly   279 ISGSCPWKCELTNDRGYVLYSALGSFYIPMFVMLFFYWRIYRAAVRTTRAINQGFKTTKGSKGIG 343
                    |.:::|..|.:||...:||||:.:||..|.||::||....|      ||.:      
Zfish   181 --------CMISHDPWYTIYSTFCAFYIPLILMLVLYGRIFKAARFRIR------KTVR------ 225

  Fly   344 SRFEEQRLTLRIHRGRGSNQQDSMHSNGSTQSTTTTLGTPSPERLSKYATRRLHHHDKIKISVSY 408
             :.|::|:...                           |.|| .|.|.|...|..:.|..:....
Zfish   226 -KPEKKRVKCL---------------------------TVSP-ALFKRANGELSKNWKSAVEPKP 261

  Fly   409 PSSENISELAGHGDVGHERRQSGNALFAVHYNGTNGRESTESQLYRQQQQHGVASSCYLQVGKGL 473
            .:..|       |.:.|........:..||.|..|                            .|
Zfish   262 AACVN-------GAIKHAEDGESLEIIEVHSNSKN----------------------------NL 291

  Fly   474 PELARRQSNTSEAGGSGHSRPANKKMGRRNIKAQVK-RFRMETKAAKTLAIIVGMFIFCWCPFFT 537
            |     ..||.      :|.|..:....:|.:|:.| ....|.|..|||.||:|.||.||.|||.
Zfish   292 P-----LPNTP------NSVPLFENKHEKNTEAKRKLALARERKTVKTLGIIMGTFILCWLPFFI 345

  Fly   538 MYIIRPFCQDCVDPL-LFSVLFWLGYCNSAVNPMIYALFSKDFRFAFKRIICRCFC 592
            ..::.|||..||.|| |..|:.||||.||.:||:|||.|:|||:.|||:||...||
Zfish   346 KALVMPFCPTCVMPLWLQDVINWLGYSNSLLNPIIYAYFNKDFQSAFKKIIKCHFC 401

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
OambNP_001262774.1 7tmA_Octopamine_R 21..583 CDD:320191 145/565 (26%)
TM helix 1 22..48 CDD:320191 11/28 (39%)
TM helix 2 55..81 CDD:320191 12/25 (48%)
TM helix 3 93..123 CDD:320191 17/29 (59%)
TM helix 4 135..158 CDD:320191 9/22 (41%)
TM helix 5 292..321 CDD:320191 13/28 (46%)
TM helix 6 512..542 CDD:320191 15/29 (52%)
TM helix 7 551..576 CDD:320191 15/25 (60%)
htr1abNP_001139238.1 7tm_GPCRs 36..392 CDD:475119 145/565 (26%)
TM helix 1 38..62 CDD:320453 9/25 (36%)
TM helix 2 71..93 CDD:320453 11/21 (52%)
TM helix 3 109..131 CDD:320453 11/21 (52%)
TM helix 4 154..170 CDD:320453 5/15 (33%)
TM helix 5 187..210 CDD:320453 9/22 (41%)
TM helix 6 326..348 CDD:320453 13/21 (62%)
TM helix 7 360..385 CDD:320453 14/24 (58%)

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