DRSC/TRiP Functional Genomics Resources

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Protein Alignment Oamb and htr2b

DIOPT Version :10

Sequence 1:NP_001262774.1 Gene:Oamb / 43982 FlyBaseID:FBgn0024944 Length:751 Species:Drosophila melanogaster
Sequence 2:NP_001038208.1 Gene:htr2b / 751784 ZFINID:ZDB-GENE-081022-57 Length:443 Species:Danio rerio


Alignment Length:606 Identity:147/606 - (24%)
Similarity:224/606 - (36%) Gaps:244/606 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 SVKWTEPANLISLAVLEFINVLVIGGNCLVIAAVFCSNKLRSVTNFFIVNLAVADLLVGLAVLPF 76
            ||.|  |::..:|.:| .:.|..||||.|||.||....||::.||||:::||||||||||.|:|.
Zfish     9 SVDW--PSHWAALLIL-LVIVPTIGGNILVILAVSLERKLQNATNFFLMSLAVADLLVGLLVMPI 70

  Fly    77 SATWEVF-KVWIFGDLWCRIWLAVDVWMCTASILNLCAISLDRYVAVTRPVTYPSIMSTKKAKSL 140
            :....:: ..|...|..|.|||.:||...||||::|||||||||:|:.:|:.:....|..|..:.
Zfish    71 ALVTVLYNSTWPLADFLCPIWLFLDVLFSTASIMHLCAISLDRYIAIKKPIQHSQFKSRAKVLAK 135

  Fly   141 IAGIWVLSFFICFP-PLVGWK--DQKAVIQPTYPKGNHTLYYTTTMSSSEDGQLGLDSIKDQGEA 202
            ||.:|::|..|..| |:.|.:  |...:   |:.| |||                         .
Zfish   136 IALVWLISIGIAIPIPIKGLQFFDHPNI---TFNK-NHT-------------------------C 171

  Fly   203 SLPPSPPHIGNGNAYNPYDPGFAPIDGSAEIRIAAIDSTSTSTTATTTTTASSSSTTETEMDLDL 267
            .|.|.               ||                                           
Zfish   172 LLSPE---------------GF------------------------------------------- 178

  Fly   268 LNAPPQNRPQTISGSCPWKCELTNDRGYVLYSALGSFYIPMFVMLFFYWRIYRAAVRTTRAINQG 332
                                     |.:.:|.:|.:|:||:.:|:..|                 
Zfish   179 -------------------------RDFKVYGSLVAFFIPLAIMMIIY----------------- 201

  Fly   333 FKTTKGSKGIGSRFEEQRLTLRIHRGRGSNQQDSMHSNGSTQSTTTTLGTPSPERLSKYATRRLH 397
                             .||:::.|.:..    .:.|..:..|.:|..    .:.||..|:    
Zfish   202 -----------------LLTIQVLRKKAY----LLRSRAARPSISTVF----QQELSVLAS---- 237

  Fly   398 HHDKIKISVSYPSSENISELAGHGDVGHERRQSGNALFAVHYNGTNGRESTESQLYRQQQQHGVA 462
                       |....||.       |.:|.::.|.:     |...|.|                
Zfish   238 -----------PEKMVISN-------GIKRDRTLNPV-----NPITGDE---------------- 263

  Fly   463 SSCYLQVGKGLPELARRQSNTSEAGGSGHSRPANKKMGRRNIKAQVKRFRMETKAAKTLAIIVGM 527
                      :|  .||.|.                :|:|:    ::....|.:|:|.|.|:..:
Zfish   264 ----------VP--LRRMST----------------IGKRS----MQNLTNEQRASKVLGIVFML 296

  Fly   528 FIFCWCPFFTMYIIRPFCQDC----VDPLLFSVLFWLGYCNSAVNPMIYALFSKDFRFAFKRIIC 588
            |:..|||||...:....|:.|    ||.|| .:..|:||.:|.:||::|.||::.||.||:|.|.
Zfish   297 FVVMWCPFFITNVTSVLCERCNGNLVDQLL-DIFQWVGYVSSGINPLVYTLFNRTFRLAFRRYIT 360

  Fly   589 RCFCSRQSVSLKSSRRGSDMS 609
               |:.:||.....:|.|.:|
Zfish   361 ---CNYKSVRTPKLQRRSKIS 378

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
OambNP_001262774.1 7tmA_Octopamine_R 21..583 CDD:320191 133/569 (23%)
TM helix 1 22..48 CDD:320191 12/25 (48%)
TM helix 2 55..81 CDD:320191 16/25 (64%)
TM helix 3 93..123 CDD:320191 20/29 (69%)
TM helix 4 135..158 CDD:320191 8/23 (35%)
TM helix 5 292..321 CDD:320191 8/28 (29%)
TM helix 6 512..542 CDD:320191 11/29 (38%)
TM helix 7 551..576 CDD:320191 10/24 (42%)
htr2bNP_001038208.1 7tm_GPCRs 15..362 CDD:475119 137/580 (24%)
TM helix 1 17..41 CDD:410628 12/24 (50%)
TM helix 2 50..72 CDD:410628 15/21 (71%)
TM helix 3 89..111 CDD:410628 13/21 (62%)
TM helix 4 134..150 CDD:410628 5/15 (33%)
TM helix 5 179..202 CDD:410628 8/56 (14%)
TM helix 6 287..309 CDD:410628 9/21 (43%)
TM helix 7 323..348 CDD:410628 11/25 (44%)

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