DRSC/TRiP Functional Genomics Resources

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Protein Alignment Oamb and 5-HT2B

DIOPT Version :10

Sequence 1:NP_001262774.1 Gene:Oamb / 43982 FlyBaseID:FBgn0024944 Length:751 Species:Drosophila melanogaster
Sequence 2:XP_061501050.1 Gene:5-HT2B / 5667641 VectorBaseID:AGAMI1_004218 Length:908 Species:Anopheles gambiae


Alignment Length:799 Identity:177/799 - (22%)
Similarity:278/799 - (34%) Gaps:266/799 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 VLVIG---GNCLVIAAVFCSNKLRSVTNFFIVNLAVADLLVGLAVLPFSATWEVFKVWIFGDLWC 93
            :||.|   ||.||..|:....:|::|||:|:::||:.||:|.|:|:|......|...:.....:|
Mosquito   123 ILVFGTAAGNILVCLAIVWERRLQNVTNYFLMSLAITDLMVALSVMPLGILTLVKGHFPLDSEYC 187

  Fly    94 RIWLAVDVWMCTASILNLCAISLDRYVAVTRPVTYPSIMSTKKAKSLIAGIWVLSFFICFP-PLV 157
            .:|:.:||..|||||::||.||:|||:::..|:.:....:.::....|:.:|:||..:..| .|:
Mosquito   188 LVWICLDVLFCTASIMHLCTISVDRYLSLRYPMKFGRNKTRRRVVLKISFVWLLSIAMSLPLSLM 252

  Fly   158 GWKDQKAVI--------QPTY-----------PKGNHTLYYTTTM----SSSED----------- 188
            ..|:..:|:        .|.|           |.....:.||.|:    ..||:           
Mosquito   253 YSKNHASVLVDGTCQIPDPVYKLVGSIVCFYIPLCVMLITYTLTVRLLAQQSENLGGVGSGGGWS 317

  Fly   189 -GQLGLDSIKDQG-------EASLPPSPPHIGNGNAYNPYDPGFAPIDGSAEIRIAAIDS----- 240
             |.||.....|:.       :.|||.         |.||:    |....|.:..::.:|:     
Mosquito   318 SGWLGQAPAFDRRNTWKRIIKLSLPA---------AQNPH----AHSAASTDTELSTLDNHDLWL 369

  Fly   241 --TSTSTTATTTTTA-----------------------------SSSSTTETEMDLDLLNAPPQN 274
              :|....::.|.||                             .||.:.|...:.:.....|.|
Mosquito   370 LESSIPEPSSITMTAMQRFGEEMLKLSQGLESVAQHSDRNSGQNGSSRSPEPSREKESFRKKPAN 434

  Fly   275 RPQ--------TISGSCPWKCELTNDRGYVLYSALGSFYIPMFVML------------------- 312
            ...        |:....|.|...::...::.....|:   |..|.|                   
Mosquito   435 AKHAPTPVTMVTVRSPVPSKKRRSSTSTWIARRNSGT---PPPVRLVRKRFKSLPHALPPPASDD 496

  Fly   313 ------FFYWRIYRAAVRTTRAINQGFKTTKGSKGI------GSRFEEQRLTLRIHRGRGSNQQD 365
                  |....:|....|..|....|.....|:.|:      .||....|   |..|..|||...
Mosquito   497 IEVDEQFMQDVLYELRDREDRGSVHGSSARPGAAGLDGVPAAASRATSDR---REGRDAGSNPAG 558

  Fly   366 --SMHSNGSTQSTTTTLGTPSPERLSKY-----ATRRLHHHDKIKI------------------- 404
              ..|...:...|..||..|.|.:...:     ..::.....:|||                   
Mosquito   559 PRQAHPLAAPSQTAATLKLPPPCKCPFFGEGAPGRQQYLRPAEIKIVKTSTDFGPMGGAASNGDS 623

  Fly   405 ----SVSYPSSENI-----------------SELAGHGDVG---------------HERRQS--G 431
                ::|..|..|:                 |.||.....|               |:||.|  |
Mosquito   624 LVYSTISISSGSNVTTQPTRSISSSLSTLPASALASPSRKGSAPKGISVVTWDQRRHQRRGSSFG 688

  Fly   432 NAL-------------------------FAVHYNGTNGRESTESQLYRQQQQHGVASSCYLQ--- 468
            .|.                         .|:...|..|..|....::|...:...:|.|.:|   
Mosquito   689 GARTSLLLTPTKASPSSVSLRRSINLRHSALEGGGGGGGGSAGETMFRGAPKKNSSSPCLMQHQT 753

  Fly   469 --------VGKG----------------LPELARRQSNTSEAGGSGHSRPANKKMGRRNIKAQVK 509
                    ||.|                :|.||    .|:.|..|.|||  |..|..||.....:
Mosquito   754 GGGGGGGAVGGGNGTAVAMMAVAAASSTVPTLA----TTTMAVRSHHSR--NSSMISRNSSRHGR 812

  Fly   510 RFRMETKAAKTLAIIVGMFIFCWCPFFTMYIIRPFCQDC---VDPLLFSVLFWLGYCNSAVNPMI 571
            ..|:|.||.|.|.::...|:..|.|||.:.::...|:.|   :|..:|..:.||||.:|.|||:.
Mosquito   813 IIRLEQKATKVLGVVFFTFVILWAPFFVLNLLPSVCKHCEDNIDQWVFEFVTWLGYASSLVNPIF 877

  Fly   572 YALFSKDFRFAFKRI-ICR 589
            |.:|:|.||.||::: :||
Mosquito   878 YTIFNKAFRDAFRKVLLCR 896

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
OambNP_001262774.1 7tmA_Octopamine_R 21..583 CDD:320191 173/790 (22%)
TM helix 1 22..48 CDD:320191 8/18 (44%)
TM helix 2 55..81 CDD:320191 11/25 (44%)
TM helix 3 93..123 CDD:320191 16/29 (55%)
TM helix 4 135..158 CDD:320191 6/23 (26%)
TM helix 5 292..321 CDD:320191 6/53 (11%)
TM helix 6 512..542 CDD:320191 11/29 (38%)
TM helix 7 551..576 CDD:320191 10/24 (42%)
5-HT2BXP_061501050.1 None

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