DRSC/TRiP Functional Genomics Resources

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Protein Alignment Oamb and 5-HT2A

DIOPT Version :9

Sequence 1:NP_001262774.1 Gene:Oamb / 43982 FlyBaseID:FBgn0024944 Length:751 Species:Drosophila melanogaster
Sequence 2:NP_730859.1 Gene:5-HT2A / 40575 FlyBaseID:FBgn0087012 Length:930 Species:Drosophila melanogaster


Alignment Length:689 Identity:163/689 - (23%)
Similarity:269/689 - (39%) Gaps:180/689 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 GNCLVIAAVFCSNKLRSVTNFFIVNLAVADLLVGLAVLPFSATWEVFKVWIFGDLWCRIWLAVDV 101
            ||.||..||....||::|||:|:.:||:|||||.|.|:|..|.......|..|..||.|::..||
  Fly   302 GNILVCLAVALDRKLQNVTNYFLFSLAIADLLVSLFVMPMGAIPAFLGYWPLGFTWCNIYVTCDV 366

  Fly   102 WMCTASILNLCAISLDRYVAVTRPVTYPSIMSTKKAKSL-IAGIWVLSFFICFP-PLVGWKDQKA 164
            ..|::|||::|.|||.||:.:..|:. ....|||:...: ||.:||::..:... .::|..::|.
  Fly   367 LACSSSILHMCFISLGRYMGIRNPLG-SRHRSTKRLTGIKIAIVWVMAMMVSSSITVLGLVNEKN 430

  Fly   165 VI-QPT---------YPKGNHTLYYTTTMSSSEDGQLGLDSIKDQGEASLPPSPPHIGNGNAYNP 219
            :: :|.         :..|:...:|...:.......|.:..::.:...:            |.:|
  Fly   431 IMPEPNICVINNRAFFVFGSLVAFYIPMLMMVTTYALTIPLLRKKARFA------------AEHP 483

  Fly   220 YDPGFAPIDGSAEIR-------IAAIDSTSTSTTATTTTTASSSSTTETEMDLDLLNAP------ 271
            ....|..:.|...:|       :....|.|.|.. ...:....:....||.:::...||      
  Fly   484 ESELFRRLGGRFTLRPQHSQQQLQMFSSFSGSNN-KFLSMGDGNRNFNTEGEMEEGGAPSRRSGV 547

  Fly   272 -PQNRP----QTIS----GSCPWKCELTNDRGYVLYSALGSFYIPMFVMLFFYWRIYRAAVRTTR 327
             |..||    :|.|    |:..::..:....|     |.||                  ..|||.
  Fly   548 EPAERPLMQQRTASSRSMGTVSFRNVVNGTSG-----AAGS------------------GRRTTG 589

  Fly   328 AINQGFKTTKGSKGIGSRFEEQRLTLRIHRGRGSNQQDSMHSNGSTQSTTTTL---GTPS-PERL 388
            ..:..|:.:    |.|           |.|...|:...|.||..:::|::...   |.|: .:||
  Fly   590 TAHSSFRFS----GAG-----------IFRHSSSSPASSCHSTSTSRSSSFWRKHGGYPNLMDRL 639

  Fly   389 -----------SKYATRRLHHHDKIKISVSYPSSENISELAGHG--DVGHERRQSGNALFAVHYN 440
                       |.:..||.    .:::::|.|.....:.:.|:|  .||.....:|.       |
  Fly   640 AIHLRLSLVPPSSHPNRRA----SVRVTISQPQLGYPTNVGGNGGRTVGATEVGAGG-------N 693

  Fly   441 GTNGRESTESQLYRQQQQHGVASSCYLQVGKGLPELARRQS---NTSEAGGSGH----------- 491
            |::...::.|.|                .|..|.::|..|.   |.|:|.|..|           
  Fly   694 GSSAGRTSNSSL----------------GGTSLMKIATIQGPILNQSQAAGGNHMVQKVKPTALK 742

  Fly   492 ----------------SRPANKKMGRRNIKAQVKRFRM-------ETKAAKTLAIIVGMFIFCWC 533
                            :|.|...:..|.:..:.||..:       |.||.|.|.::...|:.||.
  Fly   743 PEEPQRNKVRPFKFAFNRVATPTLNLRFLNNRSKRNSLSANAVATEQKATKVLGLVFFTFVLCWS 807

  Fly   534 PFFTMYIIRPFCQDC-VDPLLFSVLFWLGYCNSAVNPMIYALFSKDFRFAFKRIICRCFCSRQSV 597
            |||.:.||...|.:| |...:.:...||||.:|.:||:||.:|::.||.||.|:: :|.|.|...
  Fly   808 PFFILNIIFAACPECQVPEHVVNTCLWLGYVSSTINPIIYTIFNRTFRAAFIRLL-KCNCKRSGR 871

  Fly   598 SLKSSRRGSDMSAIRIRART-----------PSITPSAA 625
            .|:.........|:.:.|.:           |.:|||.|
  Fly   872 PLRYRSVTEGRGALSLCAPSALPLAISFQGAPLMTPSTA 910

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
OambNP_001262774.1 7tm_4 29..>154 CDD:304433 48/117 (41%)
7tm_1 37..>181 CDD:278431 53/155 (34%)
5-HT2ANP_730859.1 7tm_4 299..>428 CDD:304433 49/126 (39%)
7tm_1 302..>477 CDD:278431 54/175 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24247
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
22.010

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